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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0764 [new locus tag: NWMN_RS04320 ]
  • pan locus tag?: SAUPAN002805000
  • symbol: NWMN_0764
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0764 [new locus tag: NWMN_RS04320 ]
  • symbol: NWMN_0764
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 859215..859784
  • length: 570
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    GTGAACTATATTAAACGAACGATAATTTTACTTATATTATTCGTTGTCGTATCCCCAATA
    AACTCACCAAAAACAATTGCAGATAATAAGTATTCAGAAATTCAAGATGACAAATTCCAA
    TTACAACCTGGTGATATTATTGTTACAAAAGGCCCTGTCATGTGGGGATTTTTTGGTCAT
    TGTAGTATCGCGATTGATGATAAAACGATTTTACAAATTGAGGGGCCTGGCGACAAACCA
    ACTACACAATCCTTCGAATCTTTTAAATATAATTATGCAAGTGGCAAAAATGATTGGATG
    AAAGTTTATCGTTGCAGCTATCCTGGTGCAGGTAAAAAAGCGGCTGAATGGGTTAAGAAA
    AACTATGAGAATACAAATCATCGTTATCTAGTTACATTAAATTTGAACAGCAAAAAATTT
    ACGTATTGTACTAAAATTATCTACCAAGCTTATAAATTTGGTGTAAGTGAAAAATCAGTT
    AAAAGTTATGGACTACATATTATTTCACCCTATGCAATTAAAGATAATTTTATAGATCCA
    TACAAACTAAGGCTTGTTAAAGCTTATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    570

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0764 [new locus tag: NWMN_RS04320 ]
  • symbol: NWMN_0764
  • description: hypothetical protein
  • length: 189
  • theoretical pI: 9.80772
  • theoretical MW: 21755
  • GRAVY: -0.333862

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01107922: hypothetical protein 
  • PFAM:
    Peptidase_CA (CL0125) Peptidase_C92; Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family (PF05708; HMM-score: 22.1)
    RING (CL0229) zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein (PF02148; HMM-score: 13.2)
    Cystatin (CL0121) DUF3889; Protein of unknown function (DUF3889) (PF13028; HMM-score: 12.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: -0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide length 28 aa
    • Ymax: 0.524
    • Ymax_pos: 28
    • Cmax: 0.386
    • Cmax_pos: 28
    • Smax: 0.824
    • Smax_pos: 19
    • Smean: 0.67
    • D: 0.581
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNYIKRTIILLILFVVVSPINSPKTIADNKYSEIQDDKFQLQPGDIIVTKGPVMWGFFGHCSIAIDDKTILQIEGPGDKPTTQSFESFKYNYASGKNDWMKVYRCSYPGAGKKAAEWVKKNYENTNHRYLVTLNLNSKKFTYCTKIIYQAYKFGVSEKSVKSYGLHIISPYAIKDNFIDPYKLRLVKAY

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]