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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0830 [new locus tag: NWMN_RS04685 ]
  • pan locus tag?: SAUPAN003065000
  • symbol: glpQ
  • pan gene symbol?: glpQ
  • synonym:
  • product: glycerophosphoryl diester phosphodiesterase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0830 [new locus tag: NWMN_RS04685 ]
  • symbol: glpQ
  • product: glycerophosphoryl diester phosphodiesterase
  • replicon: chromosome
  • strand: -
  • coordinates: 917548..918477
  • length: 930
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACTAACTCTTCGAAAAGCTTCACTAAATTTATGGCTGCTTCTGCTGTTTTTACTATG
    GGATTTTTATCAGTACCTACTGCTGGCGCTGAACAAACAAATCAAATTGCAAATAAACCT
    CAGGCTATTCAATGGCATACAAATTTAACGAATGAGCGATTCACTACTATCGCACATCGT
    GGCGCAAGTGGCTATGCACCCGAGCATACGTTTCAAGCATATGATAAGAGTCATAATGAG
    TTAAAAGCATCTTATATCGAAATTGATTTACAACGTACCAAAGATGGCCATTTAGTTGCT
    ATGCATGATGAAACTGTTAACCGTACAACAAATGGACACGGTAAAGTTGAGGATTATACC
    CTTGATGAATTAAAACAGTTAGATGCAGGAAGTTGGTTTAATAAAAAATATCCAAAATAC
    GCAAGAGCAAGTTATAAAAATGCTAAAGTACCCACTTTAGATGAAATTTTAGAACGTTAT
    GGCCCGAATGCAAACTATTATATTGAAACAAAGTCACCTGATGTATACCCAGGAATGGAA
    GAACAATTATTAGCTTCATTGAAAAAGCATCACCTTTTAAATAACAATAAATTAAAAAAT
    GGACATGTAATGATTCAATCATTTTCTGACGAAAGTTTAAAGAAAATTCATCGTCAAAAT
    AAGCATGTGCCATTAGTAAAATTAGTTGATAAAGGTGAACTACAACAATTTAACGACCAA
    CGCTTAAAAGAGATACGCTCTTATGCGATTGGATTAGGTCCTGATTATACAGATTTAACT
    GAACAAAATACCCATCATTTAAAAGACTTAGGATTTATAGTACATCCTTATACAGTGAAT
    GAAAAAGCTGATATGTTACGATTAAATAAATATGGCGTTGATGGTGTCTTTACAAATTTC
    GCTGATAAATATAAAGAAGTCATTAAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    930

Protein[edit source | edit]

Protein Data Bank: 2OOG
Protein Data Bank: 2P76

General[edit source | edit]

  • locus tag: NWMN_0830 [new locus tag: NWMN_RS04685 ]
  • symbol: GlpQ
  • description: glycerophosphoryl diester phosphodiesterase
  • length: 309
  • theoretical pI: 9.14583
  • theoretical MW: 35310.5
  • GRAVY: -0.731068

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    CarbohydratesSugar alcoholsGlycerol and Glycerol-3-phosphate Uptake and Utilization Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) 
  • PFAM:
    PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 162.5)
    GDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 16.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.3
    • Cellwall Score: 4.55
    • Extracellular Score: 5.15
    • Internal Helices: 0
  • LocateP: N-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: -0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: PTAGAEQT
  • SignalP: Signal peptide length 31 aa
    • Ymax: 0.695
    • Ymax_pos: 31
    • Cmax: 0.549
    • Cmax_pos: 31
    • Smax: 0.946
    • Smax_pos: 16
    • Smean: 0.885
    • D: 0.769
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]