From AureoWiki
Jump to navigation Jump to search

NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0904 [new locus tag: NWMN_RS15265 ]
  • pan locus tag?: SAUPAN003229000
  • symbol: NWMN_0904
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0904 [new locus tag: NWMN_RS15265 ]
  • symbol: NWMN_0904
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1003127..1003417
  • length: 291
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    TTGTTTTACGCATGTCATTTTAAAGTGAAAATTGGAGGTGTAATTTTGACTAGAACTTAT
    AATATTATTGGTATCCTTTCTTGTCTTATATCTTTTATTATTATGGCGTTACCAATGATT
    TGGTACACAGCTTCAGCATTATGGTTCTTCCCAGGTGCAATCATGATATTGTTGTTATCT
    TTAGTCATTGTTTTTTGCTATATTAAAACGAAAAATCAATTACATTTATTACTAATCGTA
    TTAAATATTATTATATTGCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAA
    60
    120
    180
    240
    291

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_0904 [new locus tag: NWMN_RS15265 ]
  • symbol: NWMN_0904
  • description: hypothetical protein
  • length: 96
  • theoretical pI: 9.63916
  • theoretical MW: 10952.7
  • GRAVY: 1.65104

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined Trep_Strep; Hypothetical bacterial integral membrane protein (Trep_Strep) (PF09605; HMM-score: 11.8)
    CcmH; Cytochrome C biogenesis protein (PF03918; HMM-score: 9.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001362
    • TAT(Tat/SPI): 0.00018
    • LIPO(Sec/SPII): 0.336724
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MFYACHFKVKIGGVILTRTYNIIGILSCLISFIIMALPMIWYTASALWFFPGAIMILLLSLVIVFCYIKTKNQLHLLLIVLNIIILLFFSLPLLLS

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]