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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2285 [new locus tag: NWMN_RS13150 ]
  • pan locus tag?: SAUPAN005912000
  • symbol: NWMN_2285
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_2285 [new locus tag: NWMN_RS13150 ]
  • symbol: NWMN_2285
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2511340..2511705
  • length: 366
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAGAAGAAAAAAAACGCGATTAAAGTTATCATTATATTATTTATTTCATTAATTGTT
    GCAGTAGCATTTTTCTTTGGTCTGAAAACATATCAAGGCCATAAGAATATTCAACTAATT
    GACAGTTACTTGGAAGAGAAAAATCTAAAAGATAAAATTAAATCAGAAAAAACAGAGTAT
    AGTGCTAAAAAAGGTCTCTTCTATAAGGAAGTTACATTTAAAGATGAACCTGGTGTAACT
    TATGTTGTGCAACCAATCAGTACTAATAAAGGATTATTTGTTGAAGGCTTTGATACAGAG
    ACTAAGAAAAGTTTGAAAACTGCAAAGCATAAATATTTCAATCAAAATTATAAACCATCA
    AAATAG
    60
    120
    180
    240
    300
    360
    366

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_2285 [new locus tag: NWMN_RS13150 ]
  • symbol: NWMN_2285
  • description: hypothetical protein
  • length: 121
  • theoretical pI: 10.3674
  • theoretical MW: 14007.3
  • GRAVY: -0.459504

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108216: hypothetical protein 
  • PFAM:
    no clan definedDUF3139; Protein of unknown function (DUF3139) (PF11337; HMM-score: 71.6)
    O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 18.5)
    no clan definedSigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 16)
    O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 13.9)
    no clan definedDUF2648; Protein of unknown function (DUF2648) (PF10855; HMM-score: 13.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.282
    • Ymax_pos: 24
    • Cmax: 0.146
    • Cmax_pos: 24
    • Smax: 0.704
    • Smax_pos: 10
    • Smean: 0.572
    • D: 0.396
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKKKNAIKVIIILFISLIVAVAFFFGLKTYQGHKNIQLIDSYLEEKNLKDKIKSEKTEYSAKKGLFYKEVTFKDEPGVTYVVQPISTNKGLFVEGFDTETKKSLKTAKHKYFNQNYKPSK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]