From AureoWiki
Jump to: navigation, search
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2379 [new locus tag: NWMN_RS13705 ]
  • pan locus tag?: SAUPAN006068000
  • symbol: NWMN_2379
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_2379 [new locus tag: NWMN_RS13705 ]
  • symbol: NWMN_2379
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2614516..2615310
  • length: 795
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGATTCATTCAAAGAAATTAACGCTCGGTATATGCTTGGTATTACTCATTATATTGATT
    GTAGGTTATGTCATTATGACAAAAACAAATGGTCGAAACGCCCAAATTAAAGACACATTT
    AATCAAACATTAAAATTATATCCAACCAAAAATCTCGATGATTTTTACGATAAAGAAGGC
    TTTCGAGATCAAGAATTTAAAAAGGGTGATAAAGGTACTTGGATAGTTAATTCTGAAATG
    GTAATCGAGCCAAAAGGTAAGGATATGGAAACGAGAGGAATGGTGCTCTATATCAATCGC
    AATACTAGAACCACAAAAGGGTATTATTTTATAAGTGAAATGACAGATGACAGTAACGGC
    AGACCAAAGGATGATGAAAAAAGGTATCCGGTAAAAATGGAACATAATAAAATCATACCA
    ACGAAGCCACTACCGAATGACAAGTTAAAAAAAGAGATTGAAAACTTTAAGTTCTTTGTA
    CAATATGGCAACTTTAAAGATATTAATGATTATAAAGATGGTGATATTTCATATAATCCT
    AATGTACCAAGTTATTCGGCAAAATATCAATTGAATAATGATGATTATAATGTCCAACAG
    TTAAGAAAAAGATATGATATTCCAACCAAACAAGCGCCGAAACTATTATTGAAAGGCGAT
    GGAGATTTAAAAGGTTCATCCGTAGGTTCTAGAAGTCTTGAATTTACCTTTGTCGAAAAT
    AAAGAAGAAAACATTTATTTTACAGATTCTGTACAATATACTCCAAGTGAGGATACAAGG
    TATGAGTCAAACTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    795

Protein[edit source | edit]

Protein Data Bank: 4EG9
Protein Data Bank: 4EGD

General[edit source | edit]

  • locus tag: NWMN_2379 [new locus tag: NWMN_RS13705 ]
  • symbol: NWMN_2379
  • description: hypothetical protein
  • length: 264
  • theoretical pI: 8.95441
  • theoretical MW: 30799.7
  • GRAVY: -0.864015

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 342.8)
  • TheSEED:  
    FIG01107840: hypothetical protein 
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 425.4)
    4HB_MCP (CL0457) 4HB_MCP_1; Four helix bundle sensory module for signal transduction (PF12729; HMM-score: 14.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.297
    • Ymax_pos: 35
    • Cmax: 0.298
    • Cmax_pos: 35
    • Smax: 0.628
    • Smax_pos: 1
    • Smean: 0.337
    • D: 0.313
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MIHSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNGRPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVENKEENIYFTDSVQYTPSEDTRYESN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]