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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2433 [new locus tag: NWMN_RS13985 ]
  • pan locus tag?: SAUPAN006188000
  • symbol: NWMN_2433
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_2433 [new locus tag: NWMN_RS13985 ]
  • symbol: NWMN_2433
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2675032..2675958
  • length: 927
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    TTGGCGAATAATCATTCAGCTTTGCGTTTAAAAGGAATTATACTTGCCATTGTCGGTGCT
    TGTTTATGGGGATTAGGTGGTACTGTTTCTGATTTCTTGTTCAAATATAAGAATATTAAT
    GTCGATTGGTACGTCACTGCTCGACTTGTAGTCAGTGGTGTTTTCTTACTTATTATGTAC
    AAAATGATGCAACCCAAACGTTCAATATTTAGCGTATTCCAAGATCGACGTATGTTAGGC
    AAATTACTTATCTTCAGTATACTGGGCATGTTAGTAGTACAATATGCTTATATGGCATCT
    ATTAATACAGGTAATGCTGCGATTGCAACATTACTACAATACATTGCGCCAGTTTATATT
    ATTATTTGGTTTGTCATAAGAGGCGTTGCAAAACTAACATTATTTGATGTGCTTGCTATT
    ATCATGACACTATTAGGAACATTTTTATTATTAACAAATGGTTCATTTTCTAATTTAGTC
    GTCAATCCTGCAAGTTTATTCTGGGGTATTTTAGCTGGTGTAGCACTCGCTTTTTACACA
    ATTTATCCTTCAGACCTACTTAACCGCTTCGGTTCGATTCTAATTGTCGGGTGGGCAATG
    CTTATTTCTGGTGTTGCGATGAATTTACGCCATCCAATTTGGCACATTGATATCACTAAA
    TGGGACATATCAATTATATTATTTTTAATCTTTGGTATTATCGGTGGTACCGCACTCGCA
    TTTTATTTCTTTATCGACAGTTTACAATACATATCAGCGAAAGAAACAACATTATTCGGA
    ACTGTTGAACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAA
    CCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAA
    AGACAACCTGAAACATTAGATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    927

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_2433 [new locus tag: NWMN_RS13985 ]
  • symbol: NWMN_2433
  • description: hypothetical protein
  • length: 308
  • theoretical pI: 9.85101
  • theoretical MW: 34311.1
  • GRAVY: 1.03019

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsAmino acids, peptides and aminescarboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 107.9)
  • TheSEED:  
    FIG01108553: hypothetical protein 
  • PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 129.1)
    no clan definedCOX14; Cytochrome oxidase c assembly (PF14880; HMM-score: 10.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.195
    • Ymax_pos: 13
    • Cmax: 0.139
    • Cmax_pos: 31
    • Smax: 0.444
    • Smax_pos: 1
    • Smean: 0.371
    • D: 0.264
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MANNHSALRLKGIILAIVGACLWGLGGTVSDFLFKYKNINVDWYVTARLVVSGVFLLIMYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNAAIATLLQYIAPVYIIIWFVIRGVAKLTLFDVLAIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAFYTIYPSDLLNRFGSILIVGWAMLISGVAMNLRHPIWHIDITKWDISIILFLIFGIIGGTALAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILLLSLKRQPETLDE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]