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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01140 [old locus tag: NWMN_0203 ]
  • pan locus tag?: SAUPAN001155000
  • symbol: NWMN_RS01140
  • pan gene symbol?: rbsD
  • synonym:
  • product: D-ribose pyranase

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS01140 [old locus tag: NWMN_0203 ]
  • symbol: NWMN_RS01140
  • product: D-ribose pyranase
  • replicon: chromosome
  • strand: -
  • coordinates: 260827..261231
  • length: 405
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_009641 (260827..261231) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAAAATCAGCTGTTTTAAATGAACATATTTCAAAAGCAATCGCGACAATTGGTCAT
    TTTGATTTATTAACGATTAATGACGCTGGCATGCCAATTCCAAATGATCATCGTCGTATC
    GACCTAGCTGTAACTAAAAACTTACCACGCTTTATTGATGTCTTAGCTACAGTGTTAGAA
    GAAATGGAAATCCAAAAAATATACTTAGCAGAAGAAATAAAAGAACATAACCCTACACAA
    TTGCAACAAATTAAACAATTGATTTCATCGGAAATCGAAATCATTTTCATTCCTCACGAA
    GAAATGAAAAGTAACTTAGCTCACCCATTAAATAAAGGTAATATTCGTACTGGTGAAACA
    ACGCCCTACTCTAATATTGCATTAGAATCGAATGTTACTTTTTAA
    60
    120
    180
    240
    300
    360
    405

⊟Protein[edit source | edit]

Protein Data Bank: 3P12
Protein Data Bank: 3P13

⊟General[edit source | edit]

  • locus tag: NWMN_RS01140 [old locus tag: NWMN_0203 ]
  • symbol: NWMN_RS01140
  • description: D-ribose pyranase
  • length: 134
  • theoretical pI: 5.9179
  • theoretical MW: 15165.4
  • GRAVY: -0.214179

⊟Function[edit source | edit]

  • reaction:
    EC 5.4.99.62?  ExPASy
    D-ribose pyranaseBeta-D-ribopyranose = beta-D-ribofuranose
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    PELOTA (CL0101) RbsD_FucU; RbsD / FucU transport protein family (PF05025; HMM-score: 140.4)
    no clan definedMyb_Cef; pre-mRNA splicing factor component (PF11831; HMM-score: 17.9)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.138
    • Ymax_pos: 22
    • Cmax: 0.109
    • Cmax_pos: 39
    • Smax: 0.255
    • Smax_pos: 2
    • Smean: 0.183
    • D: 0.155
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446670527 NCBI
  • RefSeq: WP_000747873 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • NWMN_RS01140 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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