NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS01140 [old locus tag: NWMN_0203 ]
- pan locus tag?: SAUPAN001155000
- symbol: NWMN_RS01140
- pan gene symbol?: rbsD
- synonym:
- product: D-ribose pyranase
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: NWMN_RS01140 [old locus tag: NWMN_0203 ]
- symbol: NWMN_RS01140
- product: D-ribose pyranase
- replicon: chromosome
- strand: -
- coordinates: 260827..261231
- length: 405
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_009641 (260827..261231) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
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361ATGAAAAAATCAGCTGTTTTAAATGAACATATTTCAAAAGCAATCGCGACAATTGGTCAT
TTTGATTTATTAACGATTAATGACGCTGGCATGCCAATTCCAAATGATCATCGTCGTATC
GACCTAGCTGTAACTAAAAACTTACCACGCTTTATTGATGTCTTAGCTACAGTGTTAGAA
GAAATGGAAATCCAAAAAATATACTTAGCAGAAGAAATAAAAGAACATAACCCTACACAA
TTGCAACAAATTAAACAATTGATTTCATCGGAAATCGAAATCATTTTCATTCCTCACGAA
GAAATGAAAAGTAACTTAGCTCACCCATTAAATAAAGGTAATATTCGTACTGGTGAAACA
ACGCCCTACTCTAATATTGCATTAGAATCGAATGTTACTTTTTAA60
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405
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: NWMN_RS01140 [old locus tag: NWMN_0203 ]
- symbol: NWMN_RS01140
- description: D-ribose pyranase
- length: 134
- theoretical pI: 5.9179
- theoretical MW: 15165.4
- GRAVY: -0.214179
⊟Function[edit source | edit]
- reaction: EC 5.4.99.62? ExPASyD-ribose pyranaseBeta-D-ribopyranose = beta-D-ribofuranose
- TIGRFAM:
- TheSEED:
- PFAM: PELOTA (CL0101) RbsD_FucU; RbsD / FucU transport protein family (PF05025; HMM-score: 140.4)no clan definedMyb_Cef; pre-mRNA splicing factor component (PF11831; HMM-score: 17.9)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.138
- Ymax_pos: 22
- Cmax: 0.109
- Cmax_pos: 39
- Smax: 0.255
- Smax_pos: 2
- Smean: 0.183
- D: 0.155
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- NWMN_RS01140 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]