From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS02125 [old locus tag: NWMN_0375 ]
  • pan locus tag?: SAUPAN001990000
  • symbol: NWMN_RS02125
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS02125 [old locus tag: NWMN_0375 ]
  • symbol: NWMN_RS02125
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 423268..424224
  • length: 957
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (423268..424224) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGTTAACTAAAGAATTTGCACAACGCGTAGAACTAAGTGAGAAGCAAGTACGTAAAATT
    GTTCAACATTTAGAAGAACGTGGTTACCAACTAAGCAAGACTGAATATCGTGGTCGTGAA
    GCAACTGATTTCAAAGAAGAAGATATCGAGCTTTTCAAAGACATTGCCGACAAAGTAAAA
    CAAACAAATAGTTATGATCTAGCGTTTGATGAATTAGAAAAAGAAAAAGACTTCCTGCAA
    GTCATTGTCAAAAACGATGACAAAAACTTACCTACTAATCAAAATGTCGCTCAACTAGTA
    GAAGATTTACGCCTAGAAATCCAGAAAATGCGCGAAGAACGTCACCTACTTGGTCAAATG
    ATGAATCAAGTACATCAGCAACAACAAGAATTAAAAGAACTTCAAAATCAACTTACATCT
    AAAATCGATTCAAATAGCGAATCCTTAAAAGCCATCCAAACATCACAAGAGGCTATCCAA
    GAAGCGCAAGCCTCTCAAGCAAAAGCATTAGCTGAATCAACAAATAAAGTTGAAAAGAAT
    GCTGTTACTGAAGATAAAGCTGACAGTAAAGATTCGAAGGTTGCTGGAGTGAATACATCA
    ACAGACGCTAAGACGGATACTAAAGCAGAAAATGCAGGCGATGGCACTGCTACTAATGTA
    GATAAAGAGGATCAAATTTCTGCAACTGAAGCAATTGAAAAAGCCAGCGTTGAGCAGTCT
    AAAAATGACAATGCAGCTGAGACTTCAAATAAAGAAGCTACAGTAGATGCAGAAGCGCAA
    CATGATGCTGAACAACAAGTAGCAGAAGCCCATGCAGAAGCTTCTAAACAAGCTACTTCG
    AACGATTCATTGGAAGCGAAAGCAGAAAATGACAGCACAGCTTCACAGTCAGAAATGTCA
    GAACCAAAACCTCAAGAAGAGAAAAAAGGTTTCTTCGCACGTTTATTCAACCTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    957

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS02125 [old locus tag: NWMN_0375 ]
  • symbol: NWMN_RS02125
  • description: hypothetical protein
  • length: 318
  • theoretical pI: 4.42803
  • theoretical MW: 35597.6
  • GRAVY: -1.05

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairDNA excision repair protein (rad2) (TIGR00600; HMM-score: 4)
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02168; HMM-score: 3.6)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02168; HMM-score: 3.6)
    MetabolismTransport and binding proteinsCations and iron carrying compoundsK+-dependent Na+/Ca+ exchanger (TIGR00927; HMM-score: 2.8)
  • TheSEED:
  • PFAM:
    no clan definedMed9; RNA polymerase II transcription mediator complex subunit 9 (PF07544; HMM-score: 16.9)
    HTH (CL0123) HTH_36; Helix-turn-helix domain (PF13730; HMM-score: 15.2)
    no clan definedSbcD_C; Type 5 capsule protein repressor C-terminal domain (PF12320; HMM-score: 15.2)
    Snapin_Pallidin; Snapin/Pallidin (PF14712; HMM-score: 7.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.121
    • Ymax_pos: 13
    • Cmax: 0.111
    • Cmax_pos: 24
    • Smax: 0.209
    • Smax_pos: 6
    • Smean: 0.144
    • D: 0.13
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446878877 NCBI
  • RefSeq: WP_000956133 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATNVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS02125 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]