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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS03220 [old locus tag: NWMN_0562 ]
  • pan locus tag?: SAUPAN002447000
  • symbol: NWMN_RS03220
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS03220 [old locus tag: NWMN_0562 ]
  • symbol: NWMN_RS03220
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 645907..646503
  • length: 597
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (645907..646503) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATCAATAAAAATCCGAAATACAGAGTTATTAAGTATGATGATGAGTATTTAATGGTCGAT
    GTAATAAGAACTTGGCTTGTATACTTTTTTCCATTTATTAATTGGTTCATTCCAAAAAGG
    TGCGCCAAAATTAGTAGAGAAGAGTATGAAAAACTGAACACTGTTAAGCCAGTTAAAAAT
    AAAAATTTTTGGCCTGTTGTAGGAGGAACAATCCTACTAGGTGCTACTTCCAGAAAGTAC
    ATACACTTACTTAATATTCAATTAGAAAAAAGATCGGTTATATTTATATGCTTCGTTGTA
    TTTCTATGTATTTTAATCTTTTTTGTGCTTCTGAATCGAAAATTAAAATTGAAAGTTTTC
    GATAATAAAAAAGAAGAACAAAAAATAATTTTAGTACCAACATTAAAAAATGCTGTTCTT
    ATATTATATGGCTATTTGTTGATTGGAGGCATGTCAATATTAGCTTTAAGCATGTTGCTG
    ACATTAGAAAACCAGAATTTAATAACTTTTATAGCTTGGGGTATGGGGTTAATGTTGTTT
    TTCTTGATGAATATAACACTCATTGTCAATAAAACAGTCAAAGTTATAAAAAGGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    597

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS03220 [old locus tag: NWMN_0562 ]
  • symbol: NWMN_RS03220
  • description: hypothetical protein
  • length: 198
  • theoretical pI: 10.5155
  • theoretical MW: 23318.3
  • GRAVY: 0.494444

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    tandem five-TM protein (TIGR01218; HMM-score: 168.6)
  • TheSEED:
  • PFAM:
    no clan definedDUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 203)
    LysE (CL0292) TauE; Sulfite exporter TauE/SafE (PF01925; HMM-score: 22.7)
    no clan definedDHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 10.5)
    DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 6.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.116
    • Ymax_pos: 45
    • Cmax: 0.125
    • Cmax_pos: 45
    • Smax: 0.153
    • Smax_pos: 42
    • Smean: 0.079
    • D: 0.102
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_076035576 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNKNPKYRVIKYDDEYLMVDVIRTWLVYFFPFINWFIPKRCAKISREEYEKLNTVKPVKNKNFWPVVGGTILLGATSRKYIHLLNIQLEKRSVIFICFVVFLCILIFFVLLNRKLKLKVFDNKKEEQKIILVPTLKNAVLILYGYLLIGGMSILALSMLLTLENQNLITFIAWGMGLMLFFLMNITLIVNKTVKVIKR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS03220 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]