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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS04160 [old locus tag: NWMN_0734 ]
  • pan locus tag?: SAUPAN002690000
  • symbol: NWMN_RS04160
  • pan gene symbol?:
  • synonym:
  • product: YvcK family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS04160 [old locus tag: NWMN_0734 ]
  • symbol: NWMN_RS04160
  • product: YvcK family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 826443..827438
  • length: 996
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (826443..827438) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
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    481
    541
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    661
    721
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    841
    901
    961
    ATGAGACAAATAAAAGTTGTACTTATCGGTGGTGGCACTGGCTTATCAGTTATGGCTAGG
    GGATTAAGAGAATTCCCAATTGATATTACGGCGATTGTAACAGTTGCTGATAATGGTGGG
    AGTACAGGGAAAATCAGAGATGAAATGGATATACCAGCACCAGGAGACATCAGAAATGTG
    ATTGCAGCTTTAAGTGATTCTGAGTCAGTTTTAAGCCAACTTTTTCAGTATCGCTTTGAA
    GAAAATCAAATTAGCGGTCACTCATTAGGTAATTTATTAATCGCAGGTATGACTAATATT
    ACGAATGATTTCGGACATGCCATTAAAGCATTAAGTAAAATTTTAAATATTAAAGGTAGA
    GTCATTCCATCTACAAATACAAGTGTGCAATTAAATGCTGTTATGGAAGATGGAGAAATT
    GTTTTTGGAGAAACAAATATTCCTAAAAAACATAAAAAAATTGATCGTGTGTTTTTAGAA
    CCTAACGATGTGCAACCAATGGAAGAAGCAATCGATGCTTTAAGGGAAGCAGATTTAATC
    GTTCTTGGACCAGGGTCATTATATACGAGCGTTATTTCTAACTTATGTGTGAATGGTATT
    TCAGATGCGTTAATTCATTCTGATGCGCCTAAGCTATATGTTTCTAATGTGATGACGCAA
    CCTGGGGAAACAGATGGTTATAGCGTGAAAGATCATATCGATGCGATTCATAGACAAGCT
    GGACAACCGTTTATTGATTATGTCATTTGTAGTACACAAACTTTCAATGCTCAAGTTTTG
    AAAAAATATGAAGAAAAACATTCTAAACCAGTTGAAGTTAATAAGGCTGAACTTGAAAAA
    GAAAGCATAAATGTAAAAACATCTTCAAATTTAGTTGAAATTTCTGAAAATCATTTAGTA
    AGACATAATACTAAAGTGTTATCGACAATGATTTATGACATAGCTTTAGAATTAATTAGT
    ACTATTCCTTTCGTACCAAGTGATAAACGTAAATAA
    60
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    996

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS04160 [old locus tag: NWMN_0734 ]
  • symbol: NWMN_RS04160
  • description: YvcK family protein
  • length: 331
  • theoretical pI: 5.6146
  • theoretical MW: 36260.2
  • GRAVY: -0.121148

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Hypothetical proteinsConservedconserved hypothetical protein (TIGR01826; HMM-score: 439.8)
    CofD-related protein, GAK system (TIGR04357; HMM-score: 137.2)
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersOther2-phospho-L-lactate transferase (TIGR01819; EC 2.7.8.28; HMM-score: 35.4)
  • TheSEED:
  • PFAM:
    no clan definedUPF0052; Uncharacterised protein family UPF0052 (PF01933; HMM-score: 349.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.182
    • Ymax_pos: 11
    • Cmax: 0.127
    • Cmax_pos: 32
    • Smax: 0.398
    • Smax_pos: 1
    • Smean: 0.314
    • D: 0.233
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 447171683 NCBI
  • RefSeq: WP_001248939 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS04160 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]