From AureoWiki
Jump to: navigation, search

NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS04900 [old locus tag: NWMN_0874 ]
  • pan locus tag?: SAUPAN003175000
  • symbol: NWMN_RS04900
  • pan gene symbol?: —
  • synonym:
  • product: adenylate cyclase

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS04900 [old locus tag: NWMN_0874 ]
  • symbol: NWMN_RS04900
  • product: adenylate cyclase
  • replicon: chromosome
  • strand: -
  • coordinates: 969822..970415
  • length: 594
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_009641 (969822..970415) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGCAACAAATCATGAAATAGAATTTAAACAAATGATAACTGCATCAATCTATAATAAA
    TTGCAAGAGAAATATTTTAAAGACAGTGTGCTTTTTAAGCAAGTCAATTACTATATTGAT
    ACACCCGATTTCAAATTAAAGGAACATCGCTCTGCACTACGCATAAGAGTTAAAGACAAT
    CAATATGAAATGACTTTAAAGACACCAGCAAAGGTTGGTCTATTAGAATACAACTATATC
    GTCGACATTAAACCAGAGATGAACTTGATTATTTCAAACGACAATCTTCCAGATGACATT
    CGTCAAATTATAGTTGAACAGTTTGGTGTAAAAGATACAACTTTATCAATACTTGGTGCA
    TTAACGACATATCGCCAAGAAACTAAATATAAAGGTGATTTACTGGTTTTAGATAAAAGT
    GAGTATTTCGATACTACGGATTATGAGTTAGAGTTCGAAGTTAAAGACTATAATCAAGGT
    TTACAAAAGTTCCAATCTTTATTAAACGAACTAAACCTCGAACATCATCAACCTTTAAAT
    AAAGTTCAACGTTTTTTCAAGAAAAAAGAAACACTTTCAAACAATATAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    594

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: NWMN_RS04900 [old locus tag: NWMN_0874 ]
  • symbol: NWMN_RS04900
  • description: adenylate cyclase
  • length: 197
  • theoretical pI: 6.14274
  • theoretical MW: 23391.5
  • GRAVY: -0.636041

⊟Function[edit source | edit]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    CYTH (CL0273) CYTH; CYTH domain (PF01928; HMM-score: 117.9)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.101
    • Ymax_pos: 11
    • Cmax: 0.107
    • Cmax_pos: 18
    • Smax: 0.147
    • Smax_pos: 1
    • Smean: 0.091
    • D: 0.097
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446146767 NCBI
  • RefSeq: WP_000224622 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDFKLKEHRSALRIRVKDNQYEMTLKTPAKVGLLEYNYIVDIKPEMNLIISNDNLPDDIRQIIVEQFGVKDTTLSILGALTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQGLQKFQSLLNELNLEHHQPLNKVQRFFKKKETLSNNIN

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • NWMN_RS04900 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_RS04900&oldid=78133"