NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS05960 [old locus tag: NWMN_1055 ]
- pan locus tag?: SAUPAN003381000
- symbol: NWMN_RS05960
- pan gene symbol?: polX
- synonym:
- product: DNA polymerase/3'-5' exonuclease PolX
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: NWMN_RS05960 [old locus tag: NWMN_1055 ]
- symbol: NWMN_RS05960
- product: DNA polymerase/3'-5' exonuclease PolX
- replicon: chromosome
- strand: +
- coordinates: 1157536..1159248
- length: 1713
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_009641 (1157536..1159248) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1681ATGACAAAAAAAGATGTTATCAAACTATTAGAACAAATTGCTACTTATATGGAATTAAAA
GGGGAAAATACTTTTAAAATATCAGCGTATCGAAAAGCAGCTCAAAGTCTTGAATTAGAT
GAACGACCATTAGATGAAATATCTGATGTAACGGAGTTAAAAGGCATTGGTAAAGGTGTT
GCAGAAGTAATCAATGATTACCGTGAGACCGGTGAATCTCAGTATTTACAGCAATTACAG
GAAGAAGTTCCGGAAGGTCTTATTCCACTTTTGAAAATTCAAGGACTTGGAAGCAAGAAA
ATTGCTAAGCTATATAAAGAGTTGAATATTGTTGATAAAGCGTCACTTCAAGTTGCTTGT
GAAAATGGAAAAGTTAGTGAATTAAGCGGATTTGCTAAGAAAACGGAACAAAACATATTA
GAAGCTGTGAAACAACTTGGTGCTAAGAAAGATAGATATCCAATTGATCAAATGAGAAGA
CTTAATCAAGAAATCATTGATTATATAGATACATTAAATTATATCGATCAATATTCATCT
GCAGGAAGCTTCCGTCGTTTTAAAGAAATGAGCAAAGATTTAGATTTCATAATAAGTACC
GATAACCCAAAAGCAGTGCAGCAGCAATTATTAAATATTCCCAATAAAGTAAAAGAAGTT
GCAGTGGGGAACACAAAAGTTTCATTAGAATTAGCGTATGATGATGAAACGATTGGTGTC
GATTTTCGATTAATTGAACCAAGTGCTTTTTATCATACATTGCAGCATTTTACTGGGTCA
AAAGAACATAATATAAGAATTCGACAACTTGCTAAAGCACGTGATGAAAAAGTAAGTGAA
TATGGAATTGAACAAGCTGATGGTACATTAATTCAATATGATAGTGAAGCCAAGATATAT
GAACATTTTAATGTGAATTTTATACCACCTGCTATGCGAGAAGATGGTAGCGAATTTGAT
AAAGATCTAAGTAATATCATTACAATAGATGATATTAATGGTGATATTCATATGCATACA
ACGTATAGTGATGGTGCGTTTTCTATTCGAGACATGGTAGAAGCAAATATCGCAAAAGGT
TATAAATTCATGGTAATTACTGATCATTCACAAAGTTTACGTGTTGCTAATGGCTTACAA
GTAGAAAGACTTTTAAGACAAAACGAAGAAATTAAGGCTTTAGATAAAGAATATAGTGAA
ATTGATATTTATTCAGGTACAGAAATGGATATATTACCTGATGGCTCGCTGGATTATGAT
GATGAAATTTTAGCACAACTTGATTATGTAATTGGAGCTATTCATCAAAGCTTTAACCAA
TCAGAAGAACAAATTATGGAACGATTAGCTAATGCATGTCGCAATCCATACGTGCGACAT
ATAGCGCATCCAACAGGGCGTATTATAGGTAGAAGAGATGGTTATAAACCGAATATTGAA
CAATTAATGGCATTAGCTGAAGAAACGAATACAGTATTAGAAATTAATGCCAATCCACAT
CGACTGGATCTGAGCGCTGATATCGTTCGTAAATATCCAAATGTGAAATTAACTATTAAC
ACTGATGCGCATCATACAAATCATTTAGATTTTATGAATTATGGCGTAGCAACTGCGCAA
AAAGGATTTGTAACAAAAGATAGAGTGATTAACGCATTATCGCGTGAAGCTTTTAAAGAC
TTTATTGAAAATAATACAAAACTTAAGAAATAG60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: NWMN_RS05960 [old locus tag: NWMN_1055 ]
- symbol: NWMN_RS05960
- description: DNA polymerase/3'-5' exonuclease PolX
- length: 570
- theoretical pI: 5.01717
- theoretical MW: 64869.8
- GRAVY: -0.51807
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: histidinol phosphate phosphatase, HisJ family (TIGR01856; HMM-score: 37.9)Cellular processesDNA transformationcomEA protein (TIGR01259; HMM-score: 11.6)DNA metabolismDNA replication, recombination, and repairHolliday junction DNA helicase RuvA (TIGR00084; EC 3.6.4.12; HMM-score: 9.5)
- TheSEED:
- PFAM: HHH (CL0198) HHH_8; Helix-hairpin-helix domain (PF14716; HMM-score: 72.6)no clan definedDNA_pol_B_thumb; DNA polymerase beta thumb (PF14791; HMM-score: 58.9)Amidohydrolase (CL0034) PHP; PHP domain (PF02811; HMM-score: 33.3)HHH (CL0198) HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 25)NTP_transf (CL0260) DNA_pol_B_palm; DNA polymerase beta palm (PF14792; HMM-score: 21.3)HHH (CL0198) HHH_3; Helix-hairpin-helix motif (PF12836; HMM-score: 15.8)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.1
- Ymax_pos: 37
- Cmax: 0.11
- Cmax_pos: 37
- Smax: 0.14
- Smax_pos: 9
- Smean: 0.092
- D: 0.097
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRRLNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLSADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNTKLKK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- NWMN_RS05960 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]