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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS06720 [old locus tag: NWMN_1193 ]
  • pan locus tag?: SAUPAN003586000
  • symbol: NWMN_RS06720
  • pan gene symbol?: cinA
  • synonym:
  • product: competence protein CinA

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS06720 [old locus tag: NWMN_1193 ]
  • symbol: NWMN_RS06720
  • product: competence protein CinA
  • replicon: chromosome
  • strand: +
  • coordinates: 1314863..1316014
  • length: 1152
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_009641 (1314863..1316014) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACC
    AACGGACAATTTCTATCTAAAGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAA
    GTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTACGTCATGCGCTAGAAAAATAT
    GATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
    GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAA
    AGCTATTTTGAGGAACAAGGACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTA
    ATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGGCTCCAGGAATGATGGTGAAT
    TTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
    AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTA
    AGATTTGCGGGAATAGGTGAATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAA
    CAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATGAAGTATATATTAGATTGACT
    GCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
    CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTA
    ATAAAGAAAATTCATGAACCTTTTGTAATATATGATGGTATTACTAATGGTGCTTTATAT
    CATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGGGTATGATTAATCACAATGAA
    AACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
    AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTTCAT
    ATAGGCTATGATAATAACTTTGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGA
    AATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAAGATTATTAAATTGGCTTAGA
    ACAACAAATTAA
    60
    120
    180
    240
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    360
    420
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    540
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    720
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    840
    900
    960
    1020
    1080
    1140
    1152

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: NWMN_RS06720 [old locus tag: NWMN_1193 ]
  • symbol: NWMN_RS06720
  • description: competence protein CinA
  • length: 383
  • theoretical pI: 6.19719
  • theoretical MW: 43267.2
  • GRAVY: -0.27389

⊟Function[edit source | edit]

  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repaircompetence/damage-inducible protein CinA N-terminal domain (TIGR00200; HMM-score: 284.7)
    and 2 more
    molybdenum cofactor synthesis domain (TIGR00177; HMM-score: 110.5)
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersMolybdopterinmolybdenum cofactor biosynthesis protein B (TIGR02667; HMM-score: 26.3)
  • TheSEED:
  • PFAM:
    no clan definedMoCF_biosynth; Probable molybdopterin binding domain (PF00994; HMM-score: 117.5)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.199
    • Ymax_pos: 21
    • Cmax: 0.136
    • Cmax_pos: 21
    • Smax: 0.422
    • Smax_pos: 18
    • Smean: 0.259
    • D: 0.222
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 445942506 NCBI
  • RefSeq: WP_000020361 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHTVAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMVKNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEILDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFVNKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • NWMN_RS06720 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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