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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS06765 [old locus tag: NWMN_1202 ]
  • pan locus tag?: SAUPAN003597000
  • symbol: NWMN_RS06765
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS06765 [old locus tag: NWMN_1202 ]
  • symbol: NWMN_RS06765
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1325451..1325816
  • length: 366
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (1325451..1325816) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTATAATAAAGATGACGTGTTGAACCAAGCGGATAATATTGCAAATAAAATTAAAAAT
    TTGGATACTATCAAAACATATCAACAAATTGAAGCACAGATTCATCAGAACCAAACGATA
    AAGACTAAAATGGATATGTTAAAAAAGCATCAAAAACAAGCAGTAAACTTTCAAAATTAC
    GGGAAACAAAATGCGCTAGAACAGTCGGAACATACCATTCAGAGTATAGAAGCAGAAATA
    AATACATTGCCCATAGTTGAACAGTTTCAAACTTCACAATATGAAGCGAATCAATTATTG
    AAAATGTTTGTATCAACAATGGAAACACGTTTAAATGACCATAATAAAGCCAAGCATAGT
    GATTAA
    60
    120
    180
    240
    300
    360
    366

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS06765 [old locus tag: NWMN_1202 ]
  • symbol: NWMN_RS06765
  • description: hypothetical protein
  • length: 121
  • theoretical pI: 7.08949
  • theoretical MW: 14149.8
  • GRAVY: -0.97686

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    hopanoid biosynthesis associated RND transporter like protein HpnN (TIGR03480; HMM-score: 8)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairCDK-activating kinase assembly factor MAT1 (TIGR00570; HMM-score: 7.4)
  • TheSEED:
  • PFAM:
    no clan definedCom_YlbF; Control of competence regulator ComK, YlbF/YmcA (PF06133; HMM-score: 56)
    Ubiquitin (CL0072) DUF4430; Domain of unknown function (DUF4430) (PF14478; HMM-score: 13.2)
    no clan definedCemA; CemA family (PF03040; HMM-score: 11.1)
    PK_TIM (CL0151) PEPcase_2; Phosphoenolpyruvate carboxylase (PF14010; HMM-score: 10.7)
    no clan definedTristanin_u2; Unstructured region on methyltransferase between zinc-fingers (PF16638; HMM-score: 10.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.116
    • Ymax_pos: 33
    • Cmax: 0.118
    • Cmax_pos: 33
    • Smax: 0.168
    • Smax_pos: 53
    • Smean: 0.107
    • D: 0.112
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446204533 NCBI
  • RefSeq: WP_000282388 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MYNKDDVLNQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS06765 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]