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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS07880 [old locus tag: NWMN_1395 ]
  • pan locus tag?: SAUPAN003960000
  • symbol: NWMN_RS07880
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS07880 [old locus tag: NWMN_1395 ]
  • symbol: NWMN_RS07880
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1563199..1564137
  • length: 939
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (1563199..1564137) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGTTTAAAAAGGCGAAATTAATCTTAATAGCAACGCTACTGTTATCAGGATGTTCAGCG
    ATGAATAATGAATCAAAAAAAGACACAAATACAGAAACAAATACAGAAACAAAATCAGTA
    CCAGAAGAAATGGAAGCTTCAAAATATGTAGGACAAGGCTTTCAACCACCTGCAGAAAAA
    GATGCGATTGAATTTGTGAAGAAGCATCGTAAAGAATTTGAAAAAGTAGGTGAACAATTC
    TTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGT
    GTAGAAGTTTATGTGCATTGCGAAGATCATGGCATTGTATTTAATGCAAGTCTACCTTTG
    TACAAAGATGCCATCCATCAAAAAGGATCAATGCGTAGTAATGACAACGGTGATGATATG
    AGTATGATGGTGGGTACAGTGCTGAGTGGCTTTGAATATCGAGCGCAAAAAGAAAAGTAT
    GATAATTTATATAAATTTTTAAAAGAAAATGAAAAGCAATATCAATATACAGGTTTTACT
    AAAGAAGCAATTAACAAGACGCAAAACGTCGGGTATCAAAATGAATATTTTTATATTACA
    TATTTATCAAGAAATTTAAAAGAATATAGAAAATATTACGAACCATTGATACATAAAAAT
    GATAAAGAGTTTAAAGAAGGTATGCAACGAGCTAGAAAAGAGCTAAACTATACTGCTAAT
    ACAAATACTGTAGCAACGTTGTTTAGTACGAATGATGAAAGGAATAGAAAAGAAAAGATA
    AATAATGTAATAGATTTATCCGAGAAAATTGAAAGAACAAAAGATATGCCAATCAAGAAT
    ACTATAACTACTCAATTAGGAAATAAACTTATTGGCACAAAAAAAGCTCGTTTTGATGAT
    AAGAAAGTAGTGTCGTTTGGAGCATTTGAAGATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    939

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS07880 [old locus tag: NWMN_1395 ]
  • symbol: NWMN_RS07880
  • description: hypothetical protein
  • length: 312
  • theoretical pI: 8.99259
  • theoretical MW: 36092.5
  • GRAVY: -0.879167

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesSporulation and germinationsporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 12.2)
  • TheSEED:
  • PFAM:
    no clan definedDUF1672; Protein of unknown function (DUF1672) (PF07901; HMM-score: 460.1)
    HUP (CL0039) tRNA-synt_1c; tRNA synthetases class I (E and Q), catalytic domain (PF00749; HMM-score: 16.9)
    LppaM (CL0421) LPAM_1; Prokaryotic membrane lipoprotein lipid attachment site (PF08139; HMM-score: 11.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide length 28 aa
    • Ymax: 0.535
    • Ymax_pos: 28
    • Cmax: 0.349
    • Cmax_pos: 28
    • Smax: 0.95
    • Smax_pos: 19
    • Smean: 0.864
    • D: 0.663
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446395081 NCBI
  • RefSeq: WP_000472936 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MFKKAKLILIATLLLSGCSAMNNESKKDTNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNRKEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS07880 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]