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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11405 [old locus tag: NWMN_1972 ]
  • pan locus tag?: SAUPAN005335000
  • symbol: NWMN_RS11405
  • pan gene symbol?: rsbV
  • synonym:
  • product: anti-sigma B factor antagonist

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS11405 [old locus tag: NWMN_1972 ]
  • symbol: NWMN_RS11405
  • product: anti-sigma B factor antagonist
  • replicon: chromosome
  • strand: -
  • coordinates: 2190801..2191127
  • length: 327
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2190801..2191127) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGAATCTTAATATAGAAACAACCACTCAAGATAAATTTTACGAAGTTAAAGTCGGTGGA
    GAATTAGATGTTTATACTGTGCCTGAATTAGAAGAGGTTTTAACACCTATGAGACAAGAT
    GGAACTCGTGATATTTATGTTAATTTAGAAAATGTGAGTTATATGGATTCGACAGGTTTA
    GGTTTATTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTA
    GGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCAT
    GTTAATGAAGGAACGGAGGTCGAATAA
    60
    120
    180
    240
    300
    327

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS11405 [old locus tag: NWMN_1972 ]
  • symbol: NWMN_RS11405
  • description: anti-sigma B factor antagonist
  • length: 108
  • theoretical pI: 4.04316
  • theoretical MW: 12204.7
  • GRAVY: -0.269444

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Signal transductionRegulatory functionsProtein interactionsanti-anti-sigma factor (TIGR00377; HMM-score: 117.5)
    Cellular processesCellular processesSporulation and germinationanti-sigma F factor antagonist (TIGR02886; HMM-score: 66.1)
    Signal transductionRegulatory functionsProtein interactionsanti-sigma F factor antagonist (TIGR02886; HMM-score: 66.1)
  • TheSEED:
  • PFAM:
    STAS (CL0502) STAS; STAS domain (PF01740; HMM-score: 50.1)
    STAS_2; STAS domain (PF13466; HMM-score: 43.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.11
    • Ymax_pos: 44
    • Cmax: 0.104
    • Cmax_pos: 22
    • Smax: 0.179
    • Smax_pos: 39
    • Smean: 0.098
    • D: 0.105
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446975235 NCBI
  • RefSeq: WP_001052491 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGLGLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS11405 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]