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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS13760 [old locus tag: NWMN_2390 ]
  • pan locus tag?: SAUPAN006093000
  • symbol: NWMN_RS13760
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS13760 [old locus tag: NWMN_2390 ]
  • symbol: NWMN_RS13760
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2625633..2625941
  • length: 309
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2625633..2625941) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGACCGTCAACATCGTATTTAGTATCGTATTCTGCATAAGTATGGTTATATTAGGCATT
    TATGTCGCAATAACTAAAGATTTCACACTAATCTCTTTTATAAATCAAACGGCCATTGCA
    GATAAACACAAGAACCAAATTGCATATATATTTACGCTATGTATAAGTTTGAGTGCAGTA
    TTTTTAATGTCTTCAATTCTAAGCTTTGAATATGATTTTATTGCATTAGCATTCTTATTT
    TTAACGATAGCATTATTACTTATCGCATTATTCTACGTTTGCTTTTATAAAATTACAAAA
    TACCCATAA
    60
    120
    180
    240
    300
    309

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS13760 [old locus tag: NWMN_2390 ]
  • symbol: NWMN_RS13760
  • description: hypothetical protein
  • length: 102
  • theoretical pI: 8.02924
  • theoretical MW: 11604
  • GRAVY: 1.40196

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 2.7)
  • TheSEED:
  • PFAM:
    Hypoth_1 (CL0447) DUF1304; Protein of unknown function (DUF1304) (PF06993; HMM-score: 11.5)
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 7.2)
    Ion_channel (CL0030) Lig_chan; Ligand-gated ion channel (PF00060; HMM-score: 6.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.255
    • Ymax_pos: 41
    • Cmax: 0.288
    • Cmax_pos: 41
    • Smax: 0.381
    • Smax_pos: 2
    • Smean: 0.243
    • D: 0.251
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit source | edit]

  • GI: 446139855 NCBI
  • RefSeq: WP_000217710 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTVNIVFSIVFCISMVILGIYVAITKDFTLISFINQTAIADKHKNQIAYIFTLCISLSAVFLMSSILSFEYDFIALAFLFLTIALLLIALFYVCFYKITKYP

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS13760 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]