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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS14820 [old locus tag: NWMN_2584 ]
  • pan locus tag?: SAUPAN006442000
  • symbol: NWMN_RS14820
  • pan gene symbol?:
  • synonym:
  • product: DNA-directed RNA polymerase subunit delta

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS14820 [old locus tag: NWMN_2584 ]
  • symbol: NWMN_RS14820
  • product: DNA-directed RNA polymerase subunit delta
  • replicon: chromosome
  • strand: -
  • coordinates: 2851902..2852750
  • length: 849
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2851902..2852750) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGGGAAATTATTTGGTATTGCAATCAGATTTTGGACTTAGTGATGGCGCTGTAAGTGCA
    ATGTATGGAGTTGCATATACTGTAAGTGATGATATACGTGTTGAAAACTTAACGCATGAT
    ATACCACCGTATGACATTTGGGTAGCGTCATATCGTTTATATCAAACTGTAAAATACTGG
    CCTAAAGGCACAGTTTTTGTATCAGTGGTAGACCCGGGTGTAGGTAGTGATAGGCGGAGC
    ATTGCTTGCTTAACATATTCAGGTCATTACATTATTACACCTGATAATGGTTCTTTAAGT
    CATATTAAACATTACGAAGGTATTAAAAAAGTTATCGAAATTGATGAAGTGAAAAGCCGA
    TTGCCTCATTCGGAAGAAAGTCATACTTTTCATGGTAGAGATGTTTATGCATACAATGGT
    GCGAGATTAGCTGCAAATAAGATAGCGTTTGAACGTCTCGGTCAGGCAATTAATGTTGAT
    AGTATTGAGGCATTAGAAATAAGAGAAGTGACAAAAAATGAGGATTCTGTTACAGGAAGC
    ATTGATATTTTAGATATCAGATTTGGGTCATTATGGACAAATATTCCATTGGCATTCTTA
    AAATCCTTGGAAATTGTTCATGGTAATAATTTGGTGGTAACAATTTATCATCAAGATAAG
    AAAGTCTATCAAAATATTATTAAATTTGCGCGATCGTTTGCAGATGTTAATGTGGGTGAA
    CCTCTTGTGTATGTTAACTCGCTAGTAAATATTGGTGTAGCAGTCAATCAAGACTCATTT
    TCAGATTTATATCATATTGGTACTGGAAATGATTGGACGATTCATTTATCTAAAGCACCA
    TCAATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    849

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS14820 [old locus tag: NWMN_2584 ]
  • symbol: NWMN_RS14820
  • description: DNA-directed RNA polymerase subunit delta
  • length: 282
  • theoretical pI: 5.93783
  • theoretical MW: 31439.2
  • GRAVY: -0.0819149

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesBiosynthesis of natural productsadenosyl-fluoride synthase (TIGR04507; EC 2.5.1.63; HMM-score: 79.5)
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersPyridine nucleotidesnicotinamide-nucleotide adenylyltransferase (TIGR01527; EC 2.7.7.1; HMM-score: 15)
  • TheSEED:
  • PFAM:
    no clan definedSAM_adeno_trans; S-adenosyl-l-methionine hydroxide adenosyltransferase (PF01887; HMM-score: 232.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.13
    • Ymax_pos: 21
    • Cmax: 0.132
    • Cmax_pos: 21
    • Smax: 0.244
    • Smax_pos: 19
    • Smean: 0.114
    • D: 0.124
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446451068 NCBI
  • RefSeq: WP_000528923 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MGNYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYWPKGTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSRLPHSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREVTKNEDSVTGSIDILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGEPLVYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSKAPSI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS14820 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]