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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0057 [new locus tag: SA_RS00430 ]
  • pan locus tag?: SAUPAN000444000
  • symbol: ccrB
  • pan gene symbol?: ccrB
  • synonym:
  • product: cassette chromosome recombinase B

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0057 [new locus tag: SA_RS00430 ]
  • symbol: ccrB
  • product: cassette chromosome recombinase B
  • replicon: chromosome
  • strand: -
  • coordinates: 63397..65025
  • length: 1629
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAA
    AGCACAGAAGGTTATAGTATCGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTC
    CATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTATTTCAGGTAAATCTATGAAT
    CGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
    GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGAT
    TTACACAAACAAAATGTCGAATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCA
    TCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAGAATTCGAACGTAATAACATT
    GTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
    TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACAT
    GAAGCTAATATTGTGAAATATATATTCGAGTCCTATGCCAAAGGCCATGGCTATCGTAAA
    ATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAAAGGGTAAACCTTTTAGTATT
    AGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
    TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAA
    GGTAAGCATTCCCCCATTATTAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAA
    CAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGAATCTGCTTACAGGCATTATT
    CACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC
    GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAA
    GTATGTTCGGCAAACAGTGTAAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATA
    CTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAGTAACACACGTCAATCAAGAA
    AATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
    GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACA
    TCAGTAATCAGACCAAGTATTCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAA
    ATCAACCAACTCAAAAATCAACAAAATGAAGATAAGCCTTTATTTGATGCCAAAGAAATC
    AGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
    GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAA
    CAATTCTATGTCACACTCAAACTTAATAACGAAATCATAAAACAACTTTTCAATAATAAA
    CAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTTTGCCCCAAACACTATATCTT
    ACTATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1629

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0057 [new locus tag: SA_RS00430 ]
  • symbol: CcrB
  • description: cassette chromosome recombinase B
  • length: 542
  • theoretical pI: 9.86187
  • theoretical MW: 62664.4
  • GRAVY: -0.628229

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Site-specific recombinase 
  • PFAM:
    no clan definedResolvase; Resolvase, N terminal domain (PF00239; HMM-score: 138.8)
    Recombinase; Recombinase (PF07508; HMM-score: 90.5)
    Zn_Beta_Ribbon (CL0167) Ogr_Delta; Ogr/Delta-like zinc finger (PF04606; HMM-score: 65.1)
    Zn_ribbon_recom; Recombinase zinc beta ribbon domain (PF13408; HMM-score: 56.6)
    no clan definedLaminin_II; Laminin Domain II (PF06009; HMM-score: 17.2)
    Zn_Beta_Ribbon (CL0167) zf-C4_Topoisom; Topoisomerase DNA binding C4 zinc finger (PF01396; HMM-score: 15.1)
    no clan definedTMPIT; TMPIT-like protein (PF07851; HMM-score: 14.5)
    HTH (CL0123) HTH_21; HTH-like domain (PF13276; HMM-score: 14.3)
    Zn_Beta_Ribbon (CL0167) zf-ribbon_3; zinc-ribbon domain (PF13248; HMM-score: 11.8)
    no clan definedSseC; Secretion system effector C (SseC) like family (PF04888; HMM-score: 11.3)
    FlxA; FlxA-like protein (PF14282; HMM-score: 10.5)
    Tho2; Transcription factor/nuclear export subunit protein 2 (PF11262; HMM-score: 8.4)
    DUF2968; Protein of unknown function (DUF2968) (PF11180; HMM-score: 7.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.166
    • Ymax_pos: 11
    • Cmax: 0.124
    • Cmax_pos: 27
    • Smax: 0.352
    • Smax_pos: 3
    • Smean: 0.251
    • D: 0.199
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 15925764 NCBI
  • RefSeq: NP_373297 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLKALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]