PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000444000
• symbol^?: ccrB
• synonym:
• description^?: cassette chromosome recombinase B

  descriptions from strain specific annotations:

  • cassette chromosome recombinase B
  • recombinase RecB
  • Cassette chromosome recombinase B3
  • pseudogene
  • resolvase
  • resolvase, N terminal domain protein
  • resolvase domain-containing protein
  • site-specific recombinase
  • site-specific recombinase CcrB3
• strand^?: -
• coordinates^?: 451459..453087
• synteny block^?: BlockID0001930
• occurrence^?: in 64% of 33 strains

⊟Orthologs

COL:
SACOL0041 (ccrB)
N315:
SA0057 (ccrB)
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0037 (ccrB)
04-02981:
SA2981_0061 (ccrB)
08BA02176:
—
11819-97:
MS7_0069
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00360 (ccrB)
JH1:
SaurJH1_0049
JH9:
SaurJH9_0048
JKD6008:
SAA6008_00057 (ccrB)
JKD6159:
SAA6159_00038 (ccrB)
LGA251:
SARLGA251_00360 (ccrB3)
M013:
—
MRSA252:
SAR0059 (ccrB)
MSHR1132:
SAMSHR1132_00400
MSSA476:
SAS0032 (ccrB)
Mu3:
SAHV_0060 (ccrB)
Mu50:
SAV0061 (ccrB)
MW2:
MW0038 (ccrB)
RF122:
—
ST398:
—
T0131:
SAT0131_00055 (dnaC)
TCH60:
HMPREF0772_10428 (ccrB)
TW20:
SATW20_00910 (ccrB)
USA300_TCH1516:
USA300HOU_0039 (ccrB)
VC40:
—

⊟Genome Viewer

COL
N315
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN
  USA300_FPR3757  MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN
                  ************************************************************
  
  N315            RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
  USA300_FPR3757  RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
                  ******:******* *********************************************
  
  N315            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH
  USA300_FPR3757  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
                  *************************************************:**********
  
  N315            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
  USA300_FPR3757  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
                  **********.*************************************************
  
  N315            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII
  USA300_FPR3757  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII
                  ************************************************************
  
  N315            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
  USA300_FPR3757  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
                  ************************************************************
  
  N315            LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT
  USA300_FPR3757  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT
                  *********************************************:**************
  
  N315            SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK
  USA300_FPR3757  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK
                  ********************************.***************************
  
  N315            ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL
  USA300_FPR3757  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL
                  ************************************************************
  
  N315            TI
  USA300_FPR3757  TI
                  **