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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0180 [new locus tag: SA_RS01075 ]
  • pan locus tag?: SAUPAN001028000
  • symbol: SA0180
  • pan gene symbol?: brnQ1
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0180 [new locus tag: SA_RS01075 ]
  • symbol: SA0180
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 210649..211998
  • length: 1350
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAGAAGAAACTAACATTTAAAGAAAACATGTTTATAGGTTCTATGTTATTTGGTTTA
    TTCTTTGGTGCCGGCAATCTTATCTTCCCAATACACTTGGGTCAAGCTGCTGGTTCTAAC
    GTTTTTATCGCTAACTTAGGATTTTTAATTACAGCAATTGGCTTACCATTTCTAGGTATC
    ATTGCTATTGGCATTTCAAAGACATCTGGTTTATTTGAAATTGCATCGCGTGTTAATAAA
    ACATATGCTTACATTTTCACGATTGCCTTATATCTAGTTATCGGACCATTTTTCGCCTTA
    CCTAGACTGGCAACGACATCATTTGAAATTGCATTTTCGCCATTTTTATCACCAAAGCAA
    ATCACTTTATATTTATTTATTTTTAGCTTCGTCTTCTTTGTGATTGCATGGTTTTTTGCG
    AGAAAGCCATCAAGAATTTTAGAATATATCGGTAAATTTTTAAATCCGGTATTCTTAGTA
    TTATTAGCAATTATTTTATTATTTGCTTTTATCCATCCATTAGGTGGCATATCTGATGCA
    CCTATTAGTAAACAATATCAATCACATGCCTTATTTAACGGCTTTTTAGATGGATACAAT
    ACCTTAGATGCGCTAGCGTCATTGGCATTTGGTATCATCATTGTTGCAACGATTAAAAAG
    TTAGGTATCGAAAATCCAACTGATATCGCTAAAGAAACAATTAAGTCTGGTACTATCAGT
    ATCATTATGATGGGGATTATTTATACCCTACTAGCAATCATGGGTACATTAAGTATTGGT
    CATTTCAAACTTAGTGAAAATGGTGGTATTGCCTTAGCGCAAATTACGCAATACTACTTA
    GGTAACTACGGTATCGTCCTGTTGTCACTTATCGTTATGGTTGCTTGTTTAAAAACAGCC
    ATCGGTTTGATTACGGCATTTTCAGAAACATTCGAACACCTTTTCCCTAAAATGAATTAC
    CTAGCGATTGCAACAGTTGTAAGCTTTATTTCGTTCTTATTCGCGAATGTTGGCTTAACT
    AAGATTATTATGTACTCAGTCCCAGTGTTAATGTTCTTATATCCATTAGCAATTGCCTTG
    ATTGTACTAACATTATTTAGTAGCAAATTCCATCATTCAAAAATTATTTATCAATGTACC
    ATTTTCTTTACAATGATTGCTGCATTAGTAGATGGATTAAAAGCTAGTCCAGAGTTCATT
    TCAAGCACATCATTCTCACAAACTTTGATTAATTTCAGCCAAAAATATTTACCATTATCA
    GACATTGGTATGGGCTGGGTTGTTCTCAGTTTGATTGGTTTCATTATCGGCTTCATTATT
    TATAAAATTAAGCATCGTAAAATTCCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1350

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0180 [new locus tag: SA_RS01075 ]
  • symbol: SA0180
  • description: hypothetical protein
  • length: 449
  • theoretical pI: 10.0084
  • theoretical MW: 49501.1
  • GRAVY: 0.967706

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsAmino acids, peptides and aminesbranched-chain amino acid transport system II carrier protein (TIGR00796; HMM-score: 412.9)
  • TheSEED:  
    Branched-chain amino acid transport system carrier protein 
  • PFAM:
    APC (CL0062) Branch_AA_trans; Branched-chain amino acid transport protein (PF05525; HMM-score: 534.2)
    no clan definedRenin_r; Renin receptor-like protein (PF07850; HMM-score: 10.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.181
    • Ymax_pos: 14
    • Cmax: 0.176
    • Cmax_pos: 39
    • Smax: 0.413
    • Smax_pos: 3
    • Smean: 0.333
    • D: 0.241
  • predicted transmembrane helices (TMHMM): 12

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKKLTFKENMFIGSMLFGLFFGAGNLIFPIHLGQAAGSNVFIANLGFLITAIGLPFLGIIAIGISKTSGLFEIASRVNKTYAYIFTIALYLVIGPFFALPRLATTSFEIAFSPFLSPKQITLYLFIFSFVFFVIAWFFARKPSRILEYIGKFLNPVFLVLLAIILLFAFIHPLGGISDAPISKQYQSHALFNGFLDGYNTLDALASLAFGIIIVATIKKLGIENPTDIAKETIKSGTISIIMMGIIYTLLAIMGTLSIGHFKLSENGGIALAQITQYYLGNYGIVLLSLIVMVACLKTAIGLITAFSETFEHLFPKMNYLAIATVVSFISFLFANVGLTKIIMYSVPVLMFLYPLAIALIVLTLFSSKFHHSKIIYQCTIFFTMIAALVDGLKASPEFISSTSFSQTLINFSQKYLPLSDIGMGWVVLSLIGFIIGFIIYKIKHRKIP

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CodY
    CodY (TF) important in Amino acid metabolism  RegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]