From AureoWiki
Jump to: navigation, search
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1158 [new locus tag: SA_RS06575 ]
  • pan locus tag?: SAUPAN003689000
  • symbol: SA1158
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1158 [new locus tag: SA_RS06575 ]
  • symbol: SA1158
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1319297..1320388
  • length: 1092
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAATTTTTAAAAGATACTTCAATTGCTGAAATATCGTCTATACTTTATCTGATTTTT
    CCTATTGCCGGTATATTTTTTAATGAAGTATATGGTCCCAAATGGTTGTATATTATATCA
    GTCATTGTCTTTTCGTTGTCGTATCTTATATTAGTTATAGTAAATAATAGACTTAATACA
    TTAATGTTTTACATTTTGTTGATTATTCATTATTTTATTATTTGTTATTTTGTTTTCAGT
    GTACATCCAATGCTAAGTTTGTTTTTCTTTTATAGTGCTTTTGCCGTTCCATTTACTTTT
    AAAAATAATGTTAAAAAAACGGCAACTAATCTTTTCATACTAACAATGATTATATGTACA
    ATAATAACGTACTTATTGTATAACAACTATTTTGTTGCAATGATGGTTTATTATGTCGTT
    ATATCGTTAATAATGCTAGATAATTTTAAAAAAATGAAAAACCGTGAATATCAAAAAGAA
    ATAGCAGAAAAAAATAGACATATTAATACATTAATTGCTGAACAAGAGCGACATAGAATT
    GGTCAAGACTTACATGATACGTTAGGGCATGTGTTTGCAAGTTTATCATTAAAATCAGAA
    TTAGCTTATAAACTAATAGATACTGATGTAGAAAAAGTAAAAGCTGAATTATTAGCAATT
    AATAAATTATCTCGTGAATCATTGAACAAAGTTCGAGAAATTATTGATGATGTAAAATTA
    CCATCATTTATTGAAGAGATTGATAGTATACGTAAAGTTTTAAAAGATGCTGATATTGAT
    TTTACATTTGAAAATAAAGAATTAGCGCAAGTATTAAGTCCTACTAAACAATCTATGTTA
    GTTATGATTACGCGTGAAGCGATAAATAATGTTATTAAACATGCAAATGCTTCAAAAGTT
    CATGGTAAATTAAAAACTGTAAACAATCATAAATTACTGCTTATGATTGAAGATGATGGC
    AAAGGTATCGATAGTGATTGTGAGGTGAAAAGTATTTCACAGCGTGTACAACATTTAAAT
    GGAACTTTAGCAGTCGACTCAACAAATGGAACTAAAATAATCATTGAAATCTCAACAGGA
    GGAATAGCATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1092

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1158 [new locus tag: SA_RS06575 ]
  • symbol: SA1158
  • description: hypothetical protein
  • length: 363
  • theoretical pI: 8.66465
  • theoretical MW: 41660.8
  • GRAVY: 0.287052

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Signal transductionSignal transductionTwo-component systemsphosphate regulon sensor kinase PhoR (TIGR02966; EC 2.7.3.-; HMM-score: 17.2)
    MetabolismTransport and binding proteinsUnknown substrateMFS transporter, metabolite:H+ symporter (MHS) family protein (TIGR00883; HMM-score: 8.5)
  • TheSEED:  
    Nitrate and nitrite ammonification Two-component system sensor histidine kinase 
  • PFAM:
    His_Kinase_A (CL0025) HisKA_3; Histidine kinase (PF07730; HMM-score: 61.6)
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518; HMM-score: 21.7)
    HATPase_c_2; Histidine kinase-like ATPase domain (PF13581; HMM-score: 14.2)
    HATPase_c_3; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF13589; HMM-score: 13.4)
    P-loop_NTPase (CL0023) AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 12.7)
    Peroxisome (CL0484) Pex24p; Integral peroxisomal membrane peroxin (PF06398; HMM-score: 10.6)
    MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 6.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.101
    • Ymax_pos: 13
    • Cmax: 0.127
    • Cmax_pos: 29
    • Smax: 0.118
    • Smax_pos: 13
    • Smean: 0.102
    • D: 0.101
  • predicted transmembrane helices (TMHMM): 5

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKFLKDTSIAEISSILYLIFPIAGIFFNEVYGPKWLYIISVIVFSLSYLILVIVNNRLNTLMFYILLIIHYFIICYFVFSVHPMLSLFFFYSAFAVPFTFKNNVKKTATNLFILTMIICTIITYLLYNNYFVAMMVYYVVISLIMLDNFKKMKNREYQKEIAEKNRHINTLIAEQERHRIGQDLHDTLGHVFASLSLKSELAYKLIDTDVEKVKAELLAINKLSRESLNKVREIIDDVKLPSFIEEIDSIRKVLKDADIDFTFENKELAQVLSPTKQSMLVMITREAINNVIKHANASKVHGKLKTVNNHKLLLMIEDDGKGIDSDCEVKSISQRVQHLNGTLAVDSTNGTKIIIEISTGGIA

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]