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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1178 [new locus tag: SA_RS06695 ]
  • pan locus tag?: SAUPAN003718000
  • symbol: SA1178
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1178 [new locus tag: SA_RS06695 ]
  • symbol: SA1178
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1340893..1341135
  • length: 243
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    ATGGCAACTTGGTTAGCAATTATTTTTATAGTAGCTGCATTAATTTTAGGTTTAATTGGA
    GGTTTCCTTTTAGCTAGAAAATATATGATGGACTACTTGAAGAAAAACCCACCAATCAAC
    GAAGAAATGCTTCGTATGATGATGATGCAAATGGGTCAAAAACCTTCTCAGAAGAAAATT
    AATCAAATGATGACGATGATGAATAAAAATATGGATCAAAATATGAAGAGTGCGAAAAAG
    TAA
    60
    120
    180
    240
    243

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1178 [new locus tag: SA_RS06695 ]
  • symbol: SA1178
  • description: hypothetical protein
  • length: 80
  • theoretical pI: 10.8463
  • theoretical MW: 9319.56
  • GRAVY: -0.03

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    UPF0154 protein YneF 
  • PFAM:
    no clan definedUPF0154; Uncharacterised protein family (UPF0154) (PF03672; HMM-score: 105.2)
    MHB; Haemophore, haem-binding (PF16525; HMM-score: 13.6)
    FxsA; FxsA cytoplasmic membrane protein (PF04186; HMM-score: 11.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.151
    • Ymax_pos: 11
    • Cmax: 0.131
    • Cmax_pos: 26
    • Smax: 0.29
    • Smax_pos: 1
    • Smean: 0.221
    • D: 0.178
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MATWLAIIFIVAALILGLIGGFLLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNMDQNMKSAKK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]