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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1360 [new locus tag: SA_RS07700 ]
  • pan locus tag?: SAUPAN004107000
  • symbol: SA1360
  • pan gene symbol?: pepQ2
  • synonym:
  • product: Xaa-Pro dipeptidase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1360 [new locus tag: SA_RS07700 ]
  • symbol: SA1360
  • product: Xaa-Pro dipeptidase
  • replicon: chromosome
  • strand: -
  • coordinates: 1569087..1570148
  • length: 1062
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAGCAGAATAACACAAGTGCATCGTATTTTAGAACAAAAACATTTAGATGCGATTATC
    ATTCTTTCGGATTACAATAGAAGATATTTATCAGGTTTTACTGGTACCAGTGGAGCACTT
    ATCATATCTAAAGATAAACAATATTTGATAACAGACTTTAGATATATTGATCAAGCAACT
    AAGCAGGCGCCAAATTATGAAATTATTAATCGTAAATCTACTATTATTGGTGAGATTAAA
    GAATTGCTACACCAAGAAAATTTTGAAAATATAGGTTTTGAGGGGCATCATGTAAGTTAT
    GATACATACCTTGAATTAAATAAAAGCCGTATATCATTAATAAGCATTTCTAATACTGTA
    GATAAAATTAGAGACGTCAAAGATGTTGACGAAATTGCTTTAATTCAAAAAGCAGCTAAT
    ATTGTTGATGAAACATATGAATATATTTTAACTGTTGTAAAAGCAGGTATGACTGAAAAA
    GAATTAAAGGCAATATTAGAAAGTAAAATGCTAGAATTAGGAGCAGATGGACCATCATTT
    GATACGATTGTAGCATCTGGTCATAGAGGTGCATTACCACATGGTGTTGCAAGTGATAAA
    ATTATTGAAAAAGGCGACATGATTACATTAGATTTTGGCGCGTATTATAACGGCTATTGT
    TCAGATATTACTAGAACATTTGCTATTGGAGAACCAGATCCTAAACTGAAAGAAATATAT
    CAAATAGTACTTGAATCTCAAATGAAAGCAATTAATGAGATTAGACCTGGCATGACTGGT
    GCAGAAGCTGATGCCATTTCAAGAAACTATTTAGAGTCAAAAGGGTATGGAAAAGAATTT
    GGACATTCACTAGGACATGGTATTGGTTTAGAAATCCATGAAGGGCCAATGCTGGCTCGT
    ACGATACAAGATAAACTTCAAGTTAACAACTGTGTTACAGTAGAACCTGGTGTTTATATA
    GAAGGTTTGGGCGGTATAAGAATAGAAGATGATATTTTAATTACAGAAAATGGTTGTCAA
    GTCTTTACTAAATGCACAAAAGACCTTATAGTTTTAACATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1062

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1360 [new locus tag: SA_RS07700 ]
  • symbol: SA1360
  • description: Xaa-Pro dipeptidase
  • length: 353
  • theoretical pI: 5.06349
  • theoretical MW: 39379.7
  • GRAVY: -0.200283

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein fateProtein modification and repairmethionine aminopeptidase, type I (TIGR00500; EC 3.4.11.18; HMM-score: 99)
    ectoine utilization protein EutD (TIGR02993; EC 3.-.-.-; HMM-score: 63.3)
    Genetic information processingProtein fateProtein modification and repairmethionine aminopeptidase, type II (TIGR00501; EC 3.4.11.18; HMM-score: 40.1)
    Unknown functionGeneralDNA-binding protein, 42 kDa (TIGR00495; HMM-score: 15.2)
  • TheSEED:  
    Protein MetabolismProtein degradationProtein degradation Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific) 
  • PFAM:
    no clan definedPeptidase_M24; Metallopeptidase family M24 (PF00557; HMM-score: 232)
    AMP_N-like (CL0356) Creatinase_N; Creatinase/Prolidase N-terminal domain (PF01321; HMM-score: 86.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.107
    • Ymax_pos: 11
    • Cmax: 0.12
    • Cmax_pos: 40
    • Smax: 0.147
    • Smax_pos: 6
    • Smean: 0.116
    • D: 0.111
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSRITQVHRILEQKHLDAIIILSDYNRRYLSGFTGTSGALIISKDKQYLITDFRYIDQATKQAPNYEIINRKSTIIGEIKELLHQENFENIGFEGHHVSYDTYLELNKSRISLISISNTVDKIRDVKDVDEIALIQKAANIVDETYEYILTVVKAGMTEKELKAILESKMLELGADGPSFDTIVASGHRGALPHGVASDKIIEKGDMITLDFGAYYNGYCSDITRTFAIGEPDPKLKEIYQIVLESQMKAINEIRPGMTGAEADAISRNYLESKGYGKEFGHSLGHGIGLEIHEGPMLARTIQDKLQVNNCVTVEPGVYIEGLGGIRIEDDILITENGCQVFTKCTKDLIVLT

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]