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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1444 [new locus tag: SA_RS08140 ]
  • pan locus tag?: SAUPAN004212000
  • symbol: SA1444
  • pan gene symbol?:
  • synonym:
  • product: Holliday junction resolvase-like protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1444 [new locus tag: SA_RS08140 ]
  • symbol: SA1444
  • product: Holliday junction resolvase-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1645759..1646130
  • length: 372
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATTAGTGATATAATGGGTTGGACGGCACAAGGATTAGACACACTCCGAATCAATGAAGAA
    AATAATGAATTAGGTATTGACCAATTAGTAGACATTATTAAAAAACATAATGTGGGTACA
    GTCGTAATAGGACTACCTAAAAACATGAATAATTCAATAGGATTTCGAGGCGAAGCTTCG
    TTAACATATAAAGAAAAATTATTAGAAGCTTATCCTTCTATTGAGATTGTGATGTGGGAT
    GAAAGATTAAGCACAATGGCTGCTGAACGATCATTATTAGAAGCAGATGTTTCAAGACAA
    AAAAGAAAACAAGTGATTGATAAAATGGCAGCGGTATTTATTTTACAAGGCTATTTAGAT
    TCACTACATTAA
    60
    120
    180
    240
    300
    360
    372

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1444 [new locus tag: SA_RS08140 ]
  • symbol: SA1444
  • description: Holliday junction resolvase-like protein
  • length: 123
  • theoretical pI: 4.92141
  • theoretical MW: 13892.9
  • GRAVY: -0.194309

Function[edit source | edit]

  • reaction:
    EC 3.1.-.-?  ExPASy
  • TIGRFAM:
    Unknown functionGeneralputative transcription antitermination factor YqgF (TIGR00250; HMM-score: 115.1)
    MetabolismEnergy metabolismOthertartrate dehydrogenase (TIGR02089; EC 1.1.1.93; HMM-score: 11.9)
  • TheSEED:  
    CBSS-257314.1.peg.488 Putative pre-16S rRNA nuclease 
    CBSS-281090.3.peg.464 Putative pre-16S rRNA nuclease 
  • PFAM:
    YqgF (CL0580) RuvX; Holliday junction resolvase (PF03652; HMM-score: 110.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.108
    • Ymax_pos: 55
    • Cmax: 0.136
    • Cmax_pos: 55
    • Smax: 0.12
    • Smax_pos: 19
    • Smean: 0.081
    • D: 0.097
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]