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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1486 [new locus tag: SA_RS08360 ]
  • pan locus tag?: SAUPAN004272000
  • symbol: SA1486
  • pan gene symbol?: comC
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1486 [new locus tag: SA_RS08360 ]
  • symbol: SA1486
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1691682..1692389
  • length: 708
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    TTGGTAGTATTGTTATCTTATAGCTGCAGTTGTATTTTTAGTTTTCTATATCAATTTATA
    TCTATAGAAGAAACGTCATTTGATTATTTACATAGAAGATCGAAATGTGATTATTGTAAT
    TCGTCACTCAAATGGTATGAATTAATGCCGATTATTAGTTTTTTATTATTAAAAGGGCGA
    TGTCGAAACTGTCGAAAGCGTATTTCCCTAACACATTTCTTAGGGGAAACCTTTGCTTTA
    ATACCTATCGTCTTTATTAAGTATGATTTCACATACGTAAATGCTACGCTATTTATAACT
    ACATATGTTTTTCTGCTTATTTTTACTATGACCGATATCACTTCTTTAATGTTAGATTGT
    CGCTTAATTATAATTTATTGTATCGTTTCTCTCTCGTTAAGTATGATTTATCCAGTAGCT
    TTTATCATTATTAGTATGACCACGCATATATTCTACTTTTTATTTCGGGCATATATTGGT
    TATGGTGACGTTTTACTAATATCTGCACTTTCTTTGTTTTTCCCTCTCCAATTCACTATT
    TATGTCATTTTATTTACATTTGTCATTGCTGGTTTAGTTGCTTTAATTACCATGATATTT
    AAGCCGATTAAACTATTACCCCTTGTTCCATTTATATTTATTTCCTTTTTTATCAATTCA
    CTTTTTTATAATGATATCCATCAATTTTTAGGAGGCGTATATTTTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    708

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1486 [new locus tag: SA_RS08360 ]
  • symbol: SA1486
  • description: hypothetical protein
  • length: 235
  • theoretical pI: 8.36288
  • theoretical MW: 27504
  • GRAVY: 1.0834

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    cxxc_20_cxxc protein (TIGR04104; HMM-score: 17.7)
  • TheSEED:  
    DNA MetabolismDNA uptake, competenceGram Positive Competence Late competence protein ComC, processing protease 
    DNA uptake, competenceLate competence Late competence protein ComC, processing protease 
  • PFAM:
    no clan definedDiS_P_DiS; Bacterial Peptidase A24 N-terminal domain (PF06750; HMM-score: 69.6)
    Peptidase_AD (CL0130) Peptidase_A24; Type IV leader peptidase family (PF01478; HMM-score: 15.6)
    Zn_Beta_Ribbon (CL0167) DZR; Double zinc ribbon (PF12773; HMM-score: 13)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.19
    • Ymax_pos: 23
    • Cmax: 0.127
    • Cmax_pos: 22
    • Smax: 0.389
    • Smax_pos: 21
    • Smean: 0.273
    • D: 0.222
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MVVLLSYSCSCIFSFLYQFISIEETSFDYLHRRSKCDYCNSSLKWYELMPIISFLLLKGRCRNCRKRISLTHFLGETFALIPIVFIKYDFTYVNATLFITTYVFLLIFTMTDITSLMLDCRLIIIYCIVSLSLSMIYPVAFIIISMTTHIFYFLFRAYIGYGDVLLISALSLFFPLQFTIYVILFTFVIAGLVALITMIFKPIKLLPLVPFIFISFFINSLFYNDIHQFLGGVYF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]