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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1732 [new locus tag: SA_RS09945 ]
  • pan locus tag?: SAUPAN004951000
  • symbol: SA1732
  • pan gene symbol?: sdcS
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1732 [new locus tag: SA_RS09945 ]
  • symbol: SA1732
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1983510..1985072
  • length: 1563
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    ATGGCTTATTTCAATCAACATCAATCAATGATATCGAAAAGGTATTTAACATTCTTTTCA
    AAATCAAAGAAAAAGAAACCGTTTAGTGCGGGACAACTTATTGGACTAATATTAGGTCCA
    TTACTTTTCCTATTAACATTATTGTTCTTTCATCCACAAGACTTACCTTGGAAAGGCGTA
    TATGTCTTAGCGATTACTTTATGGATTGCGACTTGGTGGATTACTGAAGCAATTCCTATT
    GCAGCAACGAGCTTATTACCAATTGTGTTATTACCATTAGGTCACATACTTACACCAGAA
    CAAGTATCATCCGAATATGGCAATGATATTATCTTTTTGTTTTTAGGTGGATTTATTTTG
    GCAATTGCAATGGAAAGATGGAATTTACATACGAGAGTAGCTTTGACTATTATTAATTTA
    ATTGGTGCAAGCACTTCAAAAATATTACTTGGATTCATGGTGGCAACAGGATTCTTATCT
    ATGTTTGTATCGAACACTGCAGCTGTAATGATTATGATTCCGATTGGTTTAGCAATTATT
    AAGGAAGCACATGATTTACAAGAAGCCAATACGAATCAAACAAGTATTCAAAAGTTTGAA
    AAATCTCTAGTTTTAGCAATTGGCTATGCAGGTACGATTGGTGGCTTGGGTACATTAATC
    GGAACCCCGCCATTAATTATTTTAAAAGGACAATACATGCAACATTTTGGACATGAAATT
    AGTTTTGCTAAATGGATGATTGTAGGGATTCCAACGGTCATTGTTTTGTTAGGTATTACT
    TGGCTCTATTTAAGATATGTTGCGTTTAGACATGATTTGAAATATTTACCTGGTGGTCAG
    ACGTTAATTAAACAAAAGTTAGACGAGCTTGGCAAAATGAAGTATGAAGAAAAGGTAGTA
    CAAACTATCTTTGTACTTGCCAGCTTATTATGGATTACAAGAGAGTTTCTTCTGAAAAAA
    TGGGAAGTTACGTCATCTGTTGCAGATGGTACGATTGCTATTTTTATATCAATATTATTA
    TTTATTATTCCAGCTAAAAATACTGAAAAACATCGCCGTATCATTGACTGGGAAGTTGCA
    AAAGAGCTCCCTTGGGGTGTATTAATTTTATTTGGTGGCGGTTTAGCATTAGCGAAAGGT
    ATTTCTGAAAGTGGTTTAGCAAAATGGTTAGGCGAACAGTTGAAATCATTAAATGGTGTT
    AGTCCGATTCTTATTGTAATTGTCATAACAATCTTTGTCTTATTTTTAACTGAAGTGACA
    TCTAATACTGCAACTGCAACGATGATTTTACCGATTTTAGCAACGTTGTCTGTTGCTGTT
    GGAGTGCATCCATTACTACTTATGGCACCTGCAGCTATGGCGGCTAACTGTGCATACATG
    TTACCAGTAGGGACACCACCGAATGCAATTATCTTTGGTTCAGGTAAAATATCTATCAAA
    CAAATGGCATCAGTAGGATTCTGGGTAAACTTAATCAGTGCAATAATTATTATTTTAGTC
    GTGTATTATGTAATGCCTATAGTTTTAGGTATTGATATAAATCAACCACTGCCATTGAAA
    TAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1563

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1732 [new locus tag: SA_RS09945 ]
  • symbol: SA1732
  • description: hypothetical protein
  • length: 520
  • theoretical pI: 9.94707
  • theoretical MW: 57171.4
  • GRAVY: 0.766731

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundstransporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 294.3)
    MetabolismTransport and binding proteinsAnionstransporter, divalent anion:Na+ symporter (DASS) family (TIGR00785; HMM-score: 294.3)
  • TheSEED:  
    Sodium-dependent anion transporter family 
  • PFAM:
    IT (CL0182) Na_sulph_symp; Sodium:sulfate symporter transmembrane region (PF00939; HMM-score: 316.3)
    CitMHS; Citrate transporter (PF03600; HMM-score: 164.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 15
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.195
    • Ymax_pos: 21
    • Cmax: 0.112
    • Cmax_pos: 31
    • Smax: 0.486
    • Smax_pos: 15
    • Smean: 0.291
    • D: 0.233
  • predicted transmembrane helices (TMHMM): 14

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MAYFNQHQSMISKRYLTFFSKSKKKKPFSAGQLIGLILGPLLFLLTLLFFHPQDLPWKGVYVLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSKILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTLIGTPPLIILKGQYMQHFGHEISFAKWMIVGIPTVIVLLGITWLYLRYVAFRHDLKYLPGGQTLIKQKLDELGKMKYEEKVVQTIFVLASLLWITREFLLKKWEVTSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGIDINQPLPLK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CcpA
    CcpA (TF) important in Carbon catabolism  RegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]