Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA1743 [new locus tag: SA_RS10010 ]
• pan locus tag^?: SAUPAN004995000
• symbol: SA1743
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SA1743 [new locus tag: SA_RS10010 ]
• symbol: SA1743
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 1996296..1996859
• length: 564
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1124629 NCBI
• RefSeq: NP_375036 NCBI
• MicrobesOnline: 104062 MicrobesOnline

⊟Phenotype

• Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
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  481
  541
  
  ATGACAAATTTAGAAACTTATTTCAAAAATAGCCAACCCTTAAATGAATACATTGATGGA
  ATGAAGACAAATCAAGATACCGTTCTCAGTATCTATCAATCATTTGAGTTACCAGAAGAT
  GATTCACGCATCAAAAAAATAAAAGAGATGAATTATTCTAAAGTATTAGTAATTACTGAA
  GACTGGTGTGGAGATGCAATGATGAATCTCCCAATTCTAAAACACATCAGTGAAGCATTA
  AATTTAGAAGTACGCGTGTTCCATAGAGATGATGATACAAAACTGATCGATCAATATTTA
  ACAAATGGTAAATCACGTGCAATTCCTATCTTCGTATTCTTGAATGATCAATTCGAACAA
  GAAACAGTTTGGGGACCAAGAGCAAATGAAGTCCAAAAATTTGTAACTGATGTTCGTGCT
  GATAAATTACCGAGCAAAGATCATCCAGACTATGCAGATTTAGAAAAAGAAACACACTTA
  GTTATATCAAACCGCTATAAAACTGACGCTTCATTTTGGAAAGCAGTTTATAATTCCATC
  CTAAATAAATTAGAAAATAAATAA
  60
  120
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  300
  360
  420
  480
  540
  564
  

⊟Protein

⊟General

• locus tag: SA1743 [new locus tag: SA_RS10010 ]
• symbol: SA1743
• description: hypothetical protein
• length: 187
• theoretical pI: 4.95836
• theoretical MW: 21915.6
• GRAVY: -0.626738

⊟Function

• reaction:
• TIGRFAM:
  MetabolismEnergy metabolismElectron transportthioredoxin (TIGR01068; HMM-score: 17.9)
• TheSEED:  
  Thioredoxin 
• PFAM:
  Thioredoxin (CL0172) Thioredoxin_9; Thioredoxin (PF14595; HMM-score: 137.2)
  PDDEXK (CL0236) RE_MjaI; MjaI restriction endonuclease (PF09568; HMM-score: 18.1)
  Thioredoxin (CL0172) Thioredoxin; Thioredoxin (PF00085; HMM-score: 15.8)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular Possibility: 1
  • Signal Peptide Possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • Ymax: 0.109
  • Ymax_pos: 22
  • Cmax: 0.105
  • Cmax_pos: 19
  • Smax: 0.146
  • Smax_pos: 43
  • Smean: 0.11
  • D: 0.109
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927503 NCBI
• RefSeq: NP_375036 NCBI
• UniProt: A0A0H3JLT4 UniProt

⊟Protein sequence

• MTNLETYFKNSQPLNEYIDGMKTNQDTVLSIYQSFELPEDDSRIKKIKEMNYSKVLVITEDWCGDAMMNLPILKHISEALNLEVRVFHRDDDTKLIDQYLTNGKSRAIPIFVFLNDQFEQETVWGPRANEVQKFVTDVRADKLPSKDHPDYADLEKETHLVISNRYKTDASFWKAVYNSILNKLENK

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SA1743 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: data available for COL

⊟Protein stability

• half-life: no data available

⊟Other Information

You are kindly invited to share additional interesting facts.