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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1829 [new locus tag: SA_RS10495 ]
  • pan locus tag?: SAUPAN005229000
  • symbol: SA1829
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1829 [new locus tag: SA_RS10495 ]
  • symbol: SA1829
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2068091..2068960
  • length: 870
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATGAAATTAAATTAGAATATGACACACATGTTTCAGTGGTACATTATGAAAGTTTA
    GACTCACGTTCATTTAAGAGCTTTTCAAAACCTGAATGGAGTAAGTTGGTTAATAAACTG
    TCTGTGCCTATAGAAGCGAATTATAAGTATGCACGTGGTGTTGCTGTGTACGGTGATATT
    AAAGACGGTGCAAATGATCATGGTGAAACAATAAAAAAGCATCGCAATGACGTTAATGTC
    ATATACAGAGATGTGATTGTACTTGATTATGATGAAATAAATGATTTAAAGCAATTACAT
    GAAGCAATCAGCTCAGTTTTAAGCAGTGTTGCATGGTATTGGCACACATCGTTTAGCCAT
    ACAACTGAACAAGCTAGAATACGCCTATATATCCCTCTGAATGAGCGAATAAGTGCAGAT
    GATTATCGTAAATATACAAAAGTATTAGCAAATAAAATTGGCCATAAAGTGGATGAAGGT
    TCATATCAGCCAAGTAGATGTTTTGCGTTACCAGTTATTCAAAAAGGACACATATTTATT
    AAGCGAGTGAATGACTGTCCAATTATGAATGTTGATATGCTCGAACAGTGGTCGAAGGAG
    TTTGAACAATCAAATGCTAGTCCTAATGTCATAGGATACACTCGACGCGATAGTGAGTAC
    TGGCGCGAGCTATGCTTTGGAACAACCGAAGGCAATCGTAACAATGCACTAGCTAGCTTA
    ATTGGGCATTTATTGAGATGTCACGTTAATGATTATATTGTTTATTCATTTGCTTTATTA
    TGGGGACAATTCGCATGTAAACCACCTATGAAAGAACAAGAAATCAACGCTACTTTTCAA
    TCGATATTAAATAAACACTATAACAATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    870

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1829 [new locus tag: SA_RS10495 ]
  • symbol: SA1829
  • description: hypothetical protein
  • length: 289
  • theoretical pI: 7.37067
  • theoretical MW: 33563.7
  • GRAVY: -0.513495

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    DNA ligase D, polymerase domain (TIGR02778; HMM-score: 16.1)
  • TheSEED:  
    Phages, Prophages, Transposable elements, PlasmidsPathogenicity islandsStaphylococcal pathogenicity islands SaPI Hypothetical SAV0790 homolog in superantigen-encoding pathogenicity islands SaPI 
  • PFAM:
    no clan definedPriCT_1; Primase C terminal 1 (PriCT-1) (PF08708; HMM-score: 38.2)
    DMT (CL0184) DMT_6; Putative member of DMT superfamily (DUF486) (PF04342; HMM-score: 12.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.116
    • Ymax_pos: 32
    • Cmax: 0.121
    • Cmax_pos: 32
    • Smax: 0.165
    • Smax_pos: 51
    • Smean: 0.09
    • D: 0.106
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNEIKLEYDTHVSVVHYESLDSRSFKSFSKPEWSKLVNKLSVPIEANYKYARGVAVYGDIKDGANDHGETIKKHRNDVNVIYRDVIVLDYDEINDLKQLHEAISSVLSSVAWYWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMNVDMLEQWSKEFEQSNASPNVIGYTRRDSEYWRELCFGTTEGNRNNALASLIGHLLRCHVNDYIVYSFALLWGQFACKPPMKEQEINATFQSILNKHYNN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]