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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1839 [new locus tag: SA_RS10550 ]
  • pan locus tag?: SAUPAN005268000
  • symbol: SA1839
  • pan gene symbol?: sdrH
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1839 [new locus tag: SA_RS10550 ]
  • symbol: SA1839
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2075260..2076507
  • length: 1248
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTCATATCATTGGTTTAAGAAAATGTTACTTTCAACAAGTATTTTAATTTTAAGTAGT
    AGTAGTTTAGGGCTTGCAACGCACACAGTTGAAGCAAAGGATAACTTAAATGGAGAAAAA
    CCAACTACTAATTTGAATCATAATATAACTTCACCATCAGTAAATAGTGAAATGAATAAT
    AATGAGACTGGGACACCTCACGAATCAAATCAAACGGGTAATGAAGGAACAGGTTCGAAT
    AGTCGTGATGCTAATCCTGATTCGAATAATGTGAAGCCAGACTCAAACAACCAAAACCCA
    AGTACAGATTCAAAACCAGACCCAAATAACCAAAACCCAAGTCCGAATCCAAAACCAGAT
    CCAGATAACCCGAAACCAAAACCAGACCCAGATAAACCAAAGCCAAATCTGGATCCAAAA
    CCAGATCCAGATAACCCGAAACCAAAACCAGATCCAAAACCAGACCCAGATAAACCAAAG
    CCAAATCCGGATCCAAAACCAGATCCAGATAAACCAAAGCCAAATCCGAATCCAAAACCA
    GACCCTAATAAGCCAAATCCTAACCCGTCACCAGATCCCGATCAACCTGGGGATTCAAAT
    CATTCTGGTGGCTCGAAAAATGGGGGAACATGGAACCCAAATGCTTCAGATGGATCTAAT
    CAAGGTCAATGGCAACCAAATGGGAATCAAGGAAACTCACAAAATCCTACTGGTAATGAT
    TTTGTATCCCAACGATTTTTAGCCTTGGCAAATGGGGCTTACAAGTATAATCCGTATATT
    TTAAATCAAATTAATAAGTTGGGCAAAGATTATGGAGAAGTTACTGATGAAGACATTTAT
    AATATTATTCGAAAACAAAATTTCAGCGGAAATGCATATTTAAATGGATTACAACAGCAA
    TCGAATTACTTTAGATTCCAATATTTCAATCCATTGAAATCAGAAAGGTACTATCGTAAT
    TTAGATGAACAAGTACTCGCATTAATTACTGGTGAAATTGGATCAATGCCAGATTTGAAA
    AAGCCCGAAGATAAGCCGGATTCAAAACAACGCTCATTTGAACCGCATGAAAAAGACGAT
    TTTACAGTAGTTAAAAAACAAGAAGATAATAAGAAAAGTGCGTCAACTGCATATAGTAAA
    AGTTGGCTAGCAATTGTATGTTCTATGATGGTGGTATTTTCAATCATGCTATTCTTATTT
    GTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1248

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1839 [new locus tag: SA_RS10550 ]
  • symbol: SA1839
  • description: hypothetical protein
  • length: 415
  • theoretical pI: 8.72247
  • theoretical MW: 46222.4
  • GRAVY: -1.38096

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Membrane anchored protein 
  • PFAM:
    no clan definedOrf78; Orf78 (ac78) (PF06024; HMM-score: 16)
    COX2-transmemb; Cytochrome C oxidase subunit II, transmembrane (PF09125; HMM-score: 11.8)
    Internalin_N; Bacterial adhesion/invasion protein N terminal (PF12354; HMM-score: 10.9)
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 6.1)
    Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 5.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 2
  • LocateP: C-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: HTVEAKDN
  • SignalP: Signal peptide length 33 aa
    • Ymax: 0.632
    • Ymax_pos: 33
    • Cmax: 0.46
    • Cmax_pos: 33
    • Smax: 0.971
    • Smax_pos: 23
    • Smean: 0.874
    • D: 0.726
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA1839 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]