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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005268000
- symbol?: sdrH
- synonym:
- description?: sdrH protein
- sdrH protein
- serine-aspartate repeat-containing membrane anchored protein
- serine-aspartate repeat-containing protein SdrH
- Membrane anchored protein
- membrane anchored Ser-Asp rich fibrinogen-binding protein
- sdrH protein, putative
- Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrH
- Ser-Asp rich fibrinogen/bone sialoprotein bindin protein SdrH
- Serine-aspartate repeat family protein
- serine-aspartate repeat family protein, SdrH
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5438457..5439784
- synteny block?: BlockID0040690
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1973 (sdrH)
08BA02176:
C248_2035 (sdrH)
11819-97:
MS7_2044 (sdrH)
6850:
RSAU_001863
71193:
ST398NM01_2069
ECT-R 2:
ECTR2_1883
ED133:
SAOV_2069c
ED98:
SAAV_2079
HO 5096 0412:
SAEMRSA15_19400
JH1:
SaurJH1_2106
JH9:
SaurJH9_2069
JKD6008:
SAA6008_02070 (sdrH)
JKD6159:
SAA6159_01946 (sdrH)
LGA251:
SARLGA251_18340
M013:
M013TW_1984
MRSA252:
SAR2119
MSHR1132:
SAMSHR1132_18540
MSSA476:
SAS1938
Mu3:
SAHV_2017
Mu50:
SAV2032
MW2:
MW1956
RF122:
SAB1916c
ST398:
SAPIG2069
T0131:
SAT0131_02179
TCH60:
HMPREF0772_11166
TW20:
SATW20_20150
USA300_TCH1516:
USA300HOU_2027 (sdrH)
VC40:
SAVC_09040
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ----MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNS
N315 ----MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNS
NCTC8325 ----MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNS
Newman MSREMSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNS
USA300_FPR3757 ----MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNS
********************************************************
COL EMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPN
N315 EMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPN
NCTC8325 EMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNSSPN
Newman EMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPN
USA300_FPR3757 EMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPN
********************************************************.***
COL PKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPDKPKPNPDPKPDPDKP
N315 PKPDPDNPK----PKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKP
NCTC8325 PKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPDKPKPNPDPKPDPDKP
Newman PKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPDKPKPNPDPKPDPDKP
USA300_FPR3757 PKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPN--KPNPDPKPDPDKP
********* *********** ***********:*******: *************
COL KPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGN
N315 KPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGN
NCTC8325 KPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGN
Newman KPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGN
USA300_FPR3757 KPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGN
************************************************************
COL SQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNA
N315 SQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNA
NCTC8325 SQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNA
Newman SQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNA
USA300_FPR3757 SQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNA
************************************************************
COL YLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRS
N315 YLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRS
NCTC8325 YLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRS
Newman YLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRS
USA300_FPR3757 YLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRS
************************************************************
COL FEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNES
N315 FEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNES
NCTC8325 FEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNES
Newman FEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNES
USA300_FPR3757 FEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNES
************************************************************
COL QRR
N315 QRR
NCTC8325 QRR
Newman QRR
USA300_FPR3757 QRR
***