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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2352 [new locus tag: SA_RS13475 ]
  • pan locus tag?: SAUPAN006229000
  • symbol: SA2352
  • pan gene symbol?: crtO
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2352 [new locus tag: SA_RS13475 ]
  • symbol: SA2352
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2643247..2643744
  • length: 498
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGAAAACCATGAAAAAATATATCAAAACAGCATTTTTTTGTAGTATGTATTGGTTAATT
    GTTCAACTAAATATAGCAAATTTAGGTACAAGAATTCCTGATAAGTATTTTCGTCAGAAG
    TACATAATATTTAAATCATTTAATTTTGAGAAGCATGGAAAATTTTGGAACAAATGGTTT
    TACGTAAGAAAATGGAAACATAAGATTTTAGATGGTCATCAGCTTAATCAAAATATATAT
    GATCAGCGTCATTTAATGACAATCAATACTGATGAAATTGAAAAAATGATTATAGAGACA
    AAGAGGGCAGAGTTGATTCATTGGATATCGATACTTCCAGTCATCATATTCAATAAAGGC
    TCTCGTTTAGTAAAGTATATAAATATTTTCTATGCAATGATAGCTAATGTTCCAATCATT
    ATTGTGCAACGCTATAATCGACCGAGATTAACGCAGTTACTACGCATATTAAAACGAAGA
    GGTGAACGTCATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    498

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2352 [new locus tag: SA_RS13475 ]
  • symbol: SA2352
  • description: hypothetical protein
  • length: 165
  • theoretical pI: 10.8918
  • theoretical MW: 20309.1
  • GRAVY: -0.294545

Function[edit source | edit]

  • reaction:
    EC 2.3.1.-?  ExPASy
  • TIGRFAM:
  • TheSEED:  
    Fatty Acids, Lipids, and IsoprenoidsIsoprenoidsPolyprenyl Diphosphate Biosynthesis Glycosyl-4,4'-diaponeurosporenoate acyltransferase precursor (EC 2.3.1.-) 
  • PFAM:
    no clan definedPeptidase_S80; Bacteriophage T4-like capsid assembly protein (Gp20) (PF07230; HMM-score: 15.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.214
    • Ymax_pos: 11
    • Cmax: 0.124
    • Cmax_pos: 29
    • Smax: 0.533
    • Smax_pos: 4
    • Smean: 0.466
    • D: 0.312
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKTMKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGSRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]