From AureoWiki
Jump to: navigation, search
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2350 [new locus tag: SA_RS13465 ]
  • pan locus tag?: SAUPAN006227000
  • symbol: SA2350
  • pan gene symbol?: crtQ
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2350 [new locus tag: SA_RS13465 ]
  • symbol: SA2350
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2640628..2641755
  • length: 1128
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAATGGTTATCACGAATATTAACAGTAATAGTGACCATGTCTATGGCGTGTGGTGCA
    TTGATATTTAATCGTAGACATCAGCTAAAGACGAAAACGCTGAACTTCAATCATAAAGCA
    TTAACAATTATTATTCCGGCTAGAAATGAAGAAAAAAGAATAGGTCATTTACTACATTCG
    ATAATACAACAGCAAGTTCCAGTAGATGTCATTGTTATGAATGACGGATCGACAGATGAA
    ACAGCACGTGTAGCACGTTCATATGGTGCGACTGTAGTAGATGTTGTTGATGATACTGAC
    GGCAAATGGTATGGGAAATCACATGCTTGTTATCAAGGTGTGACGCATGCATGTACGAAT
    CGTATTGCCTTTGTAGATGCTGATGTAACTTTCTTAAGGAAAGATGCTGTTGAAACGTTG
    ATTAATCAGTATCAATTACAAGGTGAAAAAGGATTGTTAAGCGTACAGCCTTATCATATA
    ACAAAGCGTTTCTACGAAGGGTTTTCAGCGATATTTAATTTAATGACAGTCGTTGGTATG
    AATGTATTTTCTACCTTAGACGACGGTCGGACTAACCAGCATGCATTTGGACCGGTGACA
    TTAACAAATAAAGAAGATTATTATGCAACTGGAGGTCATAAAAGTGCGAACCGTCATATT
    ATTGAAGGATTTGCTTTAGGAAGTGCATATACTTCACAATCATTGCCCGTAACAGTTTAT
    GAAGGATTTCCATTTGTTGCATTTCGCATGTATCAAGAAGGATTTCAGTCATTACAAGAA
    GGATGGACAAAGCATTTGTCAACTGGGGCAGGTGGCACAAAGCCTAAGATCATGACAGCA
    ATTGTGTTGTGGTTGTTCGGTTCTATAGCGAGTATTTTAGGGCTATGTCTTAGTTTAAAA
    TATCGCCAAATGTCTGTAAGAAAAATGGTAGCACTTTACTTGAGCTATACTACACAATTT
    ATTTATCTGCATCGAAGGGTCGGCCAATTTTCTAATTTATTAATGGTATGTCATCCATTG
    TTATTTATGTTTTTTACTAAAATTTTCATCCAATCTTGGAAACAAACGCATCGTTATGGT
    GTAGTTGAATGGAAAGGTCGTCAATATTCTATATCTAAAGAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1128

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2350 [new locus tag: SA_RS13465 ]
  • symbol: SA2350
  • description: hypothetical protein
  • length: 375
  • theoretical pI: 9.84953
  • theoretical MW: 42574
  • GRAVY: -0.0506667

Function[edit source | edit]

  • reaction:
    EC 2.4.1.-?  ExPASy
  • TIGRFAM:
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 60.6)
    Unknown functionEnzymes of unknown specificitytransferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 47.4)
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 46.2)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 42.4)
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 42.1)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 30.1)
    hopanoid biosynthesis associated glycosyl transferase protein HpnI (TIGR03472; HMM-score: 14.4)
    Hypothetical proteinsConservedTIGR00454 family protein (TIGR00454; HMM-score: 13.1)
    glycosyltransferase domain (TIGR04440; EC 2.-.-.-; HMM-score: 12.8)
  • TheSEED:  
    Fatty Acids, Lipids, and IsoprenoidsIsoprenoidsPolyprenyl Diphosphate Biosynthesis 4,4'-diaponeurosporenoate glycosyltransferase (EC 2.4.1.-) 
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 61.2)
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 44.5)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 37.3)
    NTP_transf_3; MobA-like NTP transferase domain (PF12804; HMM-score: 20.2)
    Glyco_transf_21; Glycosyl transferase family 21 (PF13506; HMM-score: 17.6)
    Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 16.9)
    2heme_cytochrom (CL0328) Ferric_reduct; Ferric reductase like transmembrane component (PF01794; HMM-score: 11.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.275
    • Ymax_pos: 20
    • Cmax: 0.165
    • Cmax_pos: 20
    • Smax: 0.706
    • Smax_pos: 7
    • Smean: 0.5
    • D: 0.363
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKWLSRILTVIVTMSMACGALIFNRRHQLKTKTLNFNHKALTIIIPARNEEKRIGHLLHSIIQQQVPVDVIVMNDGSTDETARVARSYGATVVDVVDDTDGKWYGKSHACYQGVTHACTNRIAFVDADVTFLRKDAVETLINQYQLQGEKGLLSVQPYHITKRFYEGFSAIFNLMTVVGMNVFSTLDDGRTNQHAFGPVTLTNKEDYYATGGHKSANRHIIEGFALGSAYTSQSLPVTVYEGFPFVAFRMYQEGFQSLQEGWTKHLSTGAGGTKPKIMTAIVLWLFGSIASILGLCLSLKYRQMSVRKMVALYLSYTTQFIYLHRRVGQFSNLLMVCHPLLFMFFTKIFIQSWKQTHRYGVVEWKGRQYSISKEQ

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]