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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2440 [new locus tag: SA_RS13985 ]
  • pan locus tag?: SAUPAN006380000
  • symbol: SA2440
  • pan gene symbol?: gtfB
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2440 [new locus tag: SA_RS13985 ]
  • symbol: SA2440
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2744596..2745954
  • length: 1359
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGATTAAATTATTTGATTACTTTAACGATCATTCACGAAAGTTATATGAGTCTTTTAAA
    GCCAGTAAGTTGGAAGAAGATTTAACAATTGTACTCAATGACAATGGCTTTTTACCGGAC
    GATGTTATATCACCGTATCAATTTTTTGCAGATAATCATAATACAGAAAATATGAAACCA
    CGATTTTTTAATCAGGTTACTGTACCAGCTTTTTGGGAAATTAAAGGTAACAACAATTCG
    GCTACAATTAATGATATGGGACGTCTACGAGGCAAAATATTTTATCAAAGTGGAGAGCGC
    CCTAGAATTGTTAGTCGTGTCGAATGGTTTGATGACCAACAACGTGTCCGATTTGTCGAT
    TATTATTCTAAGAATGGTATTAAATTTGCACAAACTGTTTACGATTTAAATCGTAAAGCG
    ATCTTGAAGAAATATATGACAGCAGAAGGTAAAGAAGTGATTTATGAAAATTTTGTAACA
    TCTGATGTCATATTGGATTGGCAAGGGAAGTCTTACTTTTTCCCTTCAAAGCTCGCATTC
    GTATTATTTTTTATCAAGCAACTTGAAATTACGGAACATCATTTCGTTATTAACTCACTA
    GCCCTACCATTTTCAGTGTTATATAATTTGCCATCAAAAGGTAGTGATGTTTTGGTATGG
    CAAGAACACTGTAATGGTAATGTCCCGGGAAATATGCAATTGATGTGTAAAGGTGATATG
    AAACGACATTGTAATATTATTATTCCAGATAAAAACGAATATGAAACGATGCTCAATATA
    GCAGACGCAAAGGTTCAATCTCGTATTTTACAAGGCGGATATCTATATAACTATCGTAGT
    CGTAATAGATATACTAAAGAAATTGTAATATTAACTAACTCGGATCAACTTCGTAACATC
    AAGGTATTGGTTGAAACTTTACCAGATTTTAATTTTCACATCGCTGCTATTACAGAGATG
    TCTGATAAGCTAATGCAACTTGATCAATATGCTAATGTGCACTTATACCCATCTATTAAT
    ATTGACAGGGTAAATGAACTATACCAGTTATGTGATATTTATCTTGATATCAATGAGGGT
    AATGAAATTTTAAATGCGGTGGAACAAGCGTTTGACTATGAGTTGTTGATTTTAGGTTAT
    CGTCAAACCGCACACCATGCTAAAGTAACATTATCAGAGCACTTATTTGAGCATAATGAT
    GAGATAACAATGGAAAGTAAAGACCAATTAATACAAATGTTAGAAAGTTTGAAAGATCAA
    CAACAGTTTCGAGATGCTTTATTAGCACAAAAAGCACATGCACACGAAATCTCGCGTGAA
    CAATTCGAGCAAGTTTTTAAACAGGCGCTCGAAAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1359

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2440 [new locus tag: SA_RS13985 ]
  • symbol: SA2440
  • description: hypothetical protein
  • length: 452
  • theoretical pI: 5.75028
  • theoretical MW: 53041.9
  • GRAVY: -0.410841

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein fateProtein modification and repairaccessory Sec system glycosyltransferase GtfB (TIGR02919; EC 2.4.1.-; HMM-score: 666.9)
  • TheSEED:  
    Membrane TransportProtein translocation across cytoplasmic membraneSecY2-SecA2 Specialized Transport System GftB: Glycosyl transferase, family 8 
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.118
    • Ymax_pos: 22
    • Cmax: 0.122
    • Cmax_pos: 51
    • Smax: 0.212
    • Smax_pos: 9
    • Smean: 0.129
    • D: 0.122
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MIKLFDYFNDHSRKLYESFKASKLEEDLTIVLNDNGFLPDDVISPYQFFADNHNTENMKPRFFNQVTVPAFWEIKGNNNSATINDMGRLRGKIFYQSGERPRIVSRVEWFDDQQRVRFVDYYSKNGIKFAQTVYDLNRKAILKKYMTAEGKEVIYENFVTSDVILDWQGKSYFFPSKLAFVLFFIKQLEITEHHFVINSLALPFSVLYNLPSKGSDVLVWQEHCNGNVPGNMQLMCKGDMKRHCNIIIPDKNEYETMLNIADAKVQSRILQGGYLYNYRSRNRYTKEIVILTNSDQLRNIKVLVETLPDFNFHIAAITEMSDKLMQLDQYANVHLYPSINIDRVNELYQLCDIYLDINEGNEILNAVEQAFDYELLILGYRQTAHHAKVTLSEHLFEHNDEITMESKDQLIQMLESLKDQQQFRDALLAQKAHAHEISREQFEQVFKQALES

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]