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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2463 [new locus tag: SA_RS14100 ]
  • pan locus tag?: SAUPAN006420000
  • symbol: lip
  • pan gene symbol?: lip
  • synonym:
  • product: triacylglycerol lipase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2463 [new locus tag: SA_RS14100 ]
  • symbol: lip
  • product: triacylglycerol lipase
  • replicon: chromosome
  • strand: -
  • coordinates: 2774247..2776292
  • length: 2046
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    ATGATGAAAAGTCAAAATAAGTATAGTATTCGTAAATTTAGTGTAGGTGCATCTTCCATT
    TTAATAGCTACATTACTATTTTTAAGTGGTGGACAAGCACAAGCAGCTGAGAAGCAAGTG
    AATATGGGAAATTCACAGGAGGATACAGTTACAGCACAATCTATTGGGGATCAACAAACT
    AGGGAAAATGCTAATTATCAACGTGAAAACGGTGTTGACGAACAGCAACATACTGAAAAT
    TTAACTAAGAACTTGCATAATGATAAAACAATATCAGAAGAAAATCATCGTAAAACAGAT
    GATTTGAATAAAGATCAACTAAAGGATGATAAAAATTCATCGCTTAATAATAAAAATATT
    CAACGTGATACAACAAAAAATAACAATGCTAATCCTAGCGATGTAAATCAAGGGTTAGAA
    CAGGCTATTAATGATGGCAAACAAAGTAAAGTGGCGTCACAGCAACAGTCAAAAGAGGTA
    GATAATAGTCAAGATTCAAACGCTAATAACAATCTACCTTCACAAAGTTTAACAAAAGAA
    GCACCATCATTAAATAAGTCAGATCAAACAAGTCAACGAGAAATTGTTAATGAGACAGAA
    ATAGAGAAAGTACAACCACAACAAAATAATCAAGCGAATGATAAAATTACTAACCACAAT
    TTTAACAATGAACAAGAAGTGAAACCTCAAAAAGACGAAAAAACACTATCAGTTTCAGAT
    TTAAAAAACAATCAAAAATCACCAGTAGAACCAACAAAAGACAATGACAAGAAAAATGGA
    TTAAATTTATTAAAAAGTAGTGCAGTAGCCACGTTACCGAATAAGGGGACAAAGGAACTT
    ACTGCAAAAGCGAAAGATGATCAAACGAATAAAGTTGCCAAACAAGGGCAGTATAAAAAT
    CAAGATCCTATCGTTTTAGTGCATGGTTTCAATGGGTTTACAGATGATATTAATCCTTCA
    GTGTTAGCTCATTATTGGGGCGGTAATAAAATGAACATTCGCCAAGATTTAGAAGAAAAT
    GGTTACAAAGCTTATGAAGCAAGTATAAGTGCTTTTGGAAGTAACTATGACCGCGCAGTT
    GAACTTTATTATTATATCAAAGGCGGTCGTGTAGATTATGGTGCAGCACATGCAGCAAAA
    TATGGACATGAACGTTATGGAAAAACATACGAAGGAATTTACAAAGACTGGAAACCAGGA
    CAGAAGGTACACCTAGTTGGACATAGTATGGGCGGTCAAACGATACGTCAACTAGAAGAA
    TTACTGCGTAATGGTAATCGTGAAGAAATAGAGTATCAAAAGAAACATGGTGGCGAAATT
    TCTCCACTATTCAAAGGTAATAATGACAACATGATTTCATCAATTACTACTTTAGGAACA
    CCACATAATGGTACACACGCATCAGATTTAGCTGGTAATGAAGCTTTAGTGAGACAAATC
    GTATTTGATATCGGTAAAATGTTTGGTAATAAAAATTCAAGAGTAGACTTCGGGTTGGCT
    CAATGGGGTCTAAAACAGAAGCCAAATGAATCATATATTGATTATGTCAAACGCGTTAAA
    CAATCTAATTTATGGAAATCAAAAGATAATGGATTTTACGATCTGACGCGTGAGGGTGCA
    ACAGATTTAAATCGTAAAACGTCGTTGAACCCTAACATTGTGTATAAAACATACACTGGT
    GAAGCAACGCACAAAGCATTAAATAGCGATAGACAAAAAGCAGACTTAAATATGTTTTTC
    CCATTTGTGATTACTGGTAACTTAATCGGTAAAGCAACTGAAAAAGAATGGCGAGAAAAC
    GATGGTTTAGTATCCGTTATTTCTTCTCAACATCCATTTAATCAAGCTTATACAAATGCG
    ACGGATAAAATTCAAAAAGGCATTTGGCAAGTGACGCCTACAAAACATGATTGGGATCAT
    GTTGACTTTGTAGGACAAGACAGTTCTGATACAGTGCGCACAAGAGAAGAATTACAAGAT
    TTTTGGCATCATTTAGCAGACGATTTAGTGAAAACTGAAAAGGTGACTGATACTAAGCAA
    GCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2046

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2463 [new locus tag: SA_RS14100 ]
  • symbol: Lip
  • description: triacylglycerol lipase
  • length: 681
  • theoretical pI: 7.07615
  • theoretical MW: 76661.7
  • GRAVY: -1.06035

Function[edit source | edit]

  • reaction:
    EC 3.1.1.3?  ExPASy
    Triacylglycerol lipaseTriacylglycerol + H2O = diacylglycerol + a carboxylate
  • TIGRFAM:
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 53.2)
  • TheSEED:  
    Fatty Acids, Lipids, and IsoprenoidsTriacylglycerolsTriacylglycerol metabolism Triacylglycerol lipase (EC 3.1.1.3) 
  • PFAM:
    no clan definedYSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 44.3)
    AB_hydrolase (CL0028) PGAP1; PGAP1-like protein (PF07819; HMM-score: 14.2)
    Abhydrolase_6; Alpha/beta hydrolase family (PF12697; HMM-score: 12.4)
    Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 7.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.02
    • Extracellular Score: 9.98
    • Internal Helix: 1
  • LocateP: N-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: GQAQAAEK
  • SignalP: Signal peptide length 36 aa
    • Ymax: 0.86
    • Ymax_pos: 36
    • Cmax: 0.84
    • Cmax_pos: 36
    • Smax: 0.938
    • Smax_pos: 33
    • Smean: 0.832
    • D: 0.849
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MMKSQNKYSIRKFSVGASSILIATLLFLSGGQAQAAEKQVNMGNSQEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISEENHRKTDDLNKDQLKDDKNSSLNNKNIQRDTTKNNNANPSDVNQGLEQAINDGKQSKVASQQQSKEVDNSQDSNANNNLPSQSLTKEAPSLNKSDQTSQREIVNETEIEKVQPQQNNQANDKITNHNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVEPTKDNDKKNGLNLLKSSAVATLPNKGTKELTAKAKDDQTNKVAKQGQYKNQDPIVLVHGFNGFTDDINPSVLAHYWGGNKMNIRQDLEENGYKAYEASISAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGIYKDWKPGQKVHLVGHSMGGQTIRQLEELLRNGNREEIEYQKKHGGEISPLFKGNNDNMISSITTLGTPHNGTHASDLAGNEALVRQIVFDIGKMFGNKNSRVDFGLAQWGLKQKPNESYIDYVKRVKQSNLWKSKDNGFYDLTREGATDLNRKTSLNPNIVYKTYTGEATHKALNSDRQKADLNMFFPFVITGNLIGKATEKEWRENDGLVSVISSQHPFNQAYTNATDKIQKGIWQVTPTKHDWDHVDFVGQDSSDTVRTREELQDFWHHLADDLVKTEKVTDTKQA

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CcpA
    CcpA (TF) important in Carbon catabolismRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]