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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1030 [new locus tag: SACOL_RS05245 ]
  • pan locus tag?: SAUPAN003205000
  • symbol: SACOL1030
  • pan gene symbol?: ktrD
  • synonym:
  • product: sodium transport family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL1030 [new locus tag: SACOL_RS05245 ]
  • symbol: SACOL1030
  • product: sodium transport family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1039045..1040403
  • length: 1359
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    GTGTCAATTTTTAGCCAGTTTTTAAAAAGATCAAGCCCTCAACAAGGTATTGTATTGTAC
    TATATCGTCGCAATTGTCATTGCATTTTTATTATTAAACTTACCGTATGTTCATAAACCA
    GGTGTAGAAGTAAATCCAATTGACACATTATTTGTTGCCGTATCCGGAATTAGTGTTACT
    GGATTGTCTCCGATAAGTATTGTCGATACCTATTCTACATTTGGACAATTAATTATCCTC
    GTGATATTAAATATTGGTGGAATTGGCGTCATGGCAATTGGTACGATGTTATGGGTGGTA
    CTAGGTAAACATATTGGAATTAGAGAACGTCAGTTAATTATGTTAGATAATAACAAAAAC
    ACAATGAGTGGTACCGTCAAATTGATTATTGATATTGTAAAATCAATATTTGTAATCGAA
    CTCGTAGGAGCCATGTTATTAGCATTTTACTTTTATCGAGATAATCCAGATTTAAAATAT
    GCAATCATGCAAGGTGTTTTTGTTTCTATTTCTGCCACTACCAATGGTGGATTAGATATT
    ACAGGTAAGTCATTAATTCCTTATGCACATGATTATTTTGTACAAGCGATAGTTATATTT
    TTAATAATTTTAGGATCAATCGGCTTCCCAGTATTATTAGAAGTTAAAGCTTATATTCAA
    AATAGGGTTACTAATTTTAGATTTTCATTATTTACTAAAATTACGACATCAACATATTTA
    TTCCTATTTATTGTTGGGGTATTAGCCATTCTATTATTTGAACATAACCATGCGTTCAAA
    GGTTTAAGTTGGCATCAATCGTTATTCTATTCGCTGTTTCAATCAGCGACTACAAGAAGT
    GCGGGTCTTCAAACAATTGATGTGACAACACTAAGTGACCCCACTAATATTATCATGGGT
    ATTTTAATGTTTATAGGATCTTCGCCAAGTTCGGTTGGTGGCGGTATTCGTACAACAACT
    TTCGCTATTTTAATTTTGTTTTTAATTAACTTTAGTAATAATGCCGATAAAACATCCATT
    AAAGTTTACAATAGAGAAGTACACATTATGGATATTCAACGTTCATTTGCAGTATTTACA
    ATGGCGACAATTTTAACATTTTTAGGAATGCTAATTATATCAGCTACTGAAAATGGTAAG
    CTTACATTTTTACAAGTATTTTTTGAAGTCATGTCTGCATTTGGAACTTGTGGACTATCG
    CTTGGTGTCACAAGTGATATTAGTGATATTTCTAAGGTCGTACTAATGATACTCATGTTT
    ATAGGACGTGTTGGCTTAATATCATTTATCATTATGATAGCAGGACGTCGAGAACCAGAT
    AAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1359

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL1030 [new locus tag: SACOL_RS05245 ]
  • symbol: SACOL1030
  • description: sodium transport family protein
  • length: 452
  • theoretical pI: 9.57365
  • theoretical MW: 49922.9
  • GRAVY: 0.756416

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, TrkH family (TIGR00933; HMM-score: 286.5)
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, Trk family (TIGR00934; HMM-score: 81.5)
  • TheSEED:  
    Potassium metabolismPotassium metabolism - no subcategoryHyperosmotic potassium uptake Potassium uptake protein, integral membrane component, KtrD 
  • PFAM:
    Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 214)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.142
    • Ymax_pos: 42
    • Cmax: 0.127
    • Cmax_pos: 68
    • Smax: 0.266
    • Smax_pos: 35
    • Smean: 0.127
    • D: 0.136
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSIFSQFLKRSSPQQGIVLYYIVAIVIAFLLLNLPYVHKPGVEVNPIDTLFVAVSGISVTGLSPISIVDTYSTFGQLIILVILNIGGIGVMAIGTMLWVVLGKHIGIRERQLIMLDNNKNTMSGTVKLIIDIVKSIFVIELVGAMLLAFYFYRDNPDLKYAIMQGVFVSISATTNGGLDITGKSLIPYAHDYFVQAIVIFLIILGSIGFPVLLEVKAYIQNRVTNFRFSLFTKITTSTYLFLFIVGVLAILLFEHNHAFKGLSWHQSLFYSLFQSATTRSAGLQTIDVTTLSDPTNIIMGILMFIGSSPSSVGGGIRTTTFAILILFLINFSNNADKTSIKVYNREVHIMDIQRSFAVFTMATILTFLGMLIISATENGKLTFLQVFFEVMSAFGTCGLSLGVTSDISDISKVVLMILMFIGRVGLISFIIMIAGRREPDKFHYPKERIQIG

Experimental data[edit source | edit]

  • experimental localization: Integral membrane [1] [2]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]