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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2643 [new locus tag: SACOL_RS13845 ]
  • pan locus tag?: SAUPAN006334000
  • symbol: SACOL2643
  • pan gene symbol?:
  • synonym:
  • product: ABC transporter permease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL2643 [new locus tag: SACOL_RS13845 ]
  • symbol: SACOL2643
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2702905..2704905
  • length: 2001
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    ATGAAGTTAAGATTGTTATGGCACATAGTGCGACGTCAATTTATTACGCAGCGACTTGTA
    ATCATTCCATTCATTTTAGCGGTAAGTGTACTATTCATGATTGAATATACGCTTGTGTCA
    ATTGGGTTAAATAGCTACATAAAACAGAAGAATGACTTCCTAGTACCATTTATTATCATA
    GCTAATTTTTTTATGGCGCTTTTAACTTTTATTTTTATTTTCTATGCAAATCACTTTATG
    ATGTCACAAAGACGAAAAGAGTTTAGCATTTTTATGACATTGGGCATGACCAAGAAAAGT
    ATGCGTTTAATTGTAGTGATGGAAACTATCTTACAATTTGTGATAATTTCAGTCGTTAGT
    ATTGCCGGCGGATACTTACTTGGTGCGATATTTTTCTTGTTTATACAGAAAATAATGGGC
    AGTGAAGTTGCGACGTTAAGGTATTATCCATTTGACTCTGTAGCGATGTTTATTACTTTG
    ATTATCATTGCTGTATTAATGGGCATGCTACTTATATTCAACTTGTTTAGTATTAATTTT
    CAACGGCCGATAACTTATCAACATCGTTCCGATTCTAGTGTCATATCACGATGGTTGCGT
    TACGTTTTAATTGTTATAGGAAGCGCAGCACTATATTTAGGTTACTTTATTGCATTACAA
    CAAGATACGACGTTTGGTGCCTTTTTTAAAATATGGATTGTCATAGGATTAGTTATTATC
    GGTACTTATGCATTTTTTGTAGGTATAAGTGAAATAATTATTAGTATATTGCAGCAGGTA
    TCAAAAGTTTACTATCATCCACGGTATTTTTTTGTGGTAGTTGGGATGCGTGTACGTCTT
    AAAATGAATGCAGTCAGTCTTGCAACAATCACTTTGCTGTGTACATTTTTGATTGTAACG
    CTCACAATGACATTAACAACCTATCGTGATATGAATCATACCATTACGAAATTGATTACG
    AATGATTATGATTTGTCATTTAGCGACAATTCTAAGTCACAAATAGAACGTCAACAAACA
    ATTGAGAATATTAAACGTGATATACAGGGTTCGGTTAATGCAAAAGACTTCAAAGTATAT
    GAAACGACATTATTTAGAGCTTCTTTAGAAAAGAATCGTGCTTATTACAAGTTAAAACAG
    GCTAGTGATGATATTCCAATAGACTTCATTGGTAATGAAGGCGCGATATTTTCAAGACAA
    TCAGTAATGATTACAGCTTTTACTGCACAAGATTATAATCGATATCACCAAAACAAATTA
    CACTTAGACAATCAAAGTATAGGTATGATTACGAATGTACCTATTTTTAAAAAGCAGTCT
    AAGGTCGGTCTTAATAATGAAGTCTTTAAAGTGAAACAACTTGACGCACATGCGTTAAAT
    TTGATGATGATTCAAGATAGTATGGTTTTAATTGTTAAAGATAACAATCAATTACAAAAA
    GTAAAAGGATTTTATGCACATGAACAAAAGAATTCGACAATATCGATAAACTTTAATGTA
    TTTGGAAAGACGAAATTAACAACATCACAAATACAAAAGCTATCGAAAAAATACGATGCG
    TCAATAAATTCTAAATCAGAAATGCTAATGGTTTGGGATCGTTTGACAGGTGGACTAATA
    TTTGTAGGTGGCGTAGTATCAATTGTACTTGTCATTGGAATATTTCTAATGATGTATTAT
    AAACAAGTCTCAGAAGCCTATGCAAATCAGCACAATTATGACATTATGAAAAAACTTGGT
    TTAGATAATGGAAGAATAGCAAAGATAACACGAAATCAAATGACTTTCTTGTTCGCAATA
    CCAATAACAGTAGCACTGATTCACACATTAATTTCTAGTAACATTGTATATACGTTACTA
    AATATGATAGGTATTAATAACCATCATATATTTTTAACAAGTTACGTACTAGCTGTCATT
    ATAATTTCGTTTCTATATATGGCGATGTACAAAATAACTTCCTATATTTATGCTAAAGTT
    ATTCATCAACAACGCAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2001

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL2643 [new locus tag: SACOL_RS13845 ]
  • symbol: SACOL2643
  • description: ABC transporter permease
  • length: 666
  • theoretical pI: 10.2436
  • theoretical MW: 76732.6
  • GRAVY: 0.434535

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 3.9)
  • TheSEED:  
    ABC transporter-like sensor and permease protein SAV2622 
  • PFAM:
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 39.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.131
    • Ymax_pos: 15
    • Cmax: 0.117
    • Cmax_pos: 50
    • Smax: 0.219
    • Smax_pos: 14
    • Smean: 0.172
    • D: 0.147
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKLRLLWHIVRRQFITQRLVIIPFILAVSVLFMIEYTLVSIGLNSYIKQKNDFLVPFIIIANFFMALLTFIFIFYANHFMMSQRRKEFSIFMTLGMTKKSMRLIVVMETILQFVIISVVSIAGGYLLGAIFFLFIQKIMGSEVATLRYYPFDSVAMFITLIIIAVLMGMLLIFNLFSINFQRPITYQHRSDSSVISRWLRYVLIVIGSAALYLGYFIALQQDTTFGAFFKIWIVIGLVIIGTYAFFVGISEIIISILQQVSKVYYHPRYFFVVVGMRVRLKMNAVSLATITLLCTFLIVTLTMTLTTYRDMNHTITKLITNDYDLSFSDNSKSQIERQQTIENIKRDIQGSVNAKDFKVYETTLFRASLEKNRAYYKLKQASDDIPIDFIGNEGAIFSRQSVMITAFTAQDYNRYHQNKLHLDNQSIGMITNVPIFKKQSKVGLNNEVFKVKQLDAHALNLMMIQDSMVLIVKDNNQLQKVKGFYAHEQKNSTISINFNVFGKTKLTTSQIQKLSKKYDASINSKSEMLMVWDRLTGGLIFVGGVVSIVLVIGIFLMMYYKQVSEAYANQHNYDIMKKLGLDNGRIAKITRNQMTFLFAIPITVALIHTLISSNIVYTLLNMIGINNHHIFLTSYVLAVIIISFLYMAMYKITSYIYAKVIHQQRN

Experimental data[edit source | edit]

  • experimental localization: Integral membrane [1]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int. J. Med. Microbiol.: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

Relevant publications[edit source | edit]