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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01910 [old locus tag: SACOL0380 ]
  • pan locus tag?: SAUPAN001819000
  • symbol: SACOL_RS01910
  • pan gene symbol?:
  • synonym:
  • product: phage tail family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS01910 [old locus tag: SACOL0380 ]
  • symbol: SACOL_RS01910
  • product: phage tail family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 388623..389447
  • length: 825
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (388623..389447) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
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    ATGCAATCTTTTGTAAAAATCATAGATGGTTACAAGGAAGAAGTAATAACAGATTTTAAT
    CAGCTTATATTTTTAGATGCAAGGGCTGAAAGTCCAAACACCAATGATAACAGTGTAACT
    ATTAACGGAGTAGATGGTATTTTACCGGGCGCAATTAGTTTTGCGCCTTTTTCATTAGTA
    TTAAGGTTTGGCTATGATGGTATAGATGTTATAGATTTAAATTTATTTGAGCATTGGTTT
    AGATCTGTGTTTAATCGCAGACATCCTTATTATGTTATTACTTCTCAAATGCCTGGTGTT
    AAATATGCAGTGAATACAGCTAATGTTACATCTAATTTAAAAGATGGTTCTTCAACTGAA
    ATTGAAGTAAGTTTAAATGTTTATAAAGGGTATTCTGAATCAGTTAATTGGACCGATAGC
    GAGTTCTTATTCGACTCTAATTGGATGTTTGAAAATGGAATTCCTCTTGATTTCACACCT
    AAATATACTCATACATCAAATCAATTTACTATTTGGAACGGTTCTACTGATACGATAAAT
    CCACGATTCAAGCACGATTTGAAAATATTAATTAATTTAAATGCGAGTGGAGGATTTGAA
    CTGGTTAACTATACAACAGGTGATATTTTTAAGTACAACAAAAGTATAGATAAAAACACT
    GATTTTGTTTTAGATGGTGTGTATGCATATCGAGATATAAATAGAGTGGGAATTGATACA
    AATAGAGGCATTATAACATTAGCGCCAGGTAAAAATGAATTTAAGATTAAAGGAGACGTC
    AGTGATATTAAAACTACATTTAAGTTTCCTTTTATTTATAGGTAG
    60
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    825

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS01910 [old locus tag: SACOL0380 ]
  • symbol: SACOL_RS01910
  • description: phage tail family protein
  • length: 274
  • theoretical pI: 4.96386
  • theoretical MW: 31189.8
  • GRAVY: -0.261314

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan definedSipho_tail; Phage tail protein (PF05709; HMM-score: 120.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.12
    • Ymax_pos: 30
    • Cmax: 0.125
    • Cmax_pos: 30
    • Smax: 0.219
    • Smax_pos: 27
    • Smean: 0.083
    • D: 0.106
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 447113277 NCBI
  • RefSeq: WP_001190533 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLVLRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTPKYTHTSNQFTIWNGSTDTINPRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDTNRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS01910 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]