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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001819000
  • symbol?:
  • description?: phage tail protein

      descriptions from strain specific annotations:

    • phage tail protein
    • phiSLT ORF191-like protein
    • holin-like protein
    • phage protein
    • phage tail family protein
  • strand?: -
  • coordinates?: 2256614..2257998
  • synteny block?: BlockID0011950
  • occurrence?: in 53% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0362
    11819-97:
    MS7_1455
    71193:
    ECT-R 2:
    ED133:
    SAOV_0332
    ED98:
    SAAV_2019
    HO 5096 0412:
    SAEMRSA15_13610
    JH1:
    SaurJH1_1092
    JH9:
    SaurJH9_1071
    JKD6008:
    JKD6159:
    SAA6159_01364
    LGA251:
    M013:
    MRSA252:
    SAR1506
    MSHR1132:
    MSSA476:
    SAS0945
    Mu3:
    Mu50:
    MW2:
    MW1389
    RF122:
    ST398:
    SAPIG0387
    T0131:
    TCH60:
    HMPREF0772_11703
    TW20:
    USA300_TCH1516:
    USA300HOU_1440
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLV
    NCTC8325        MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLV
    USA300_FPR3757  MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLV
                    ************************************************************

    COL             LRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTE
    NCTC8325        LRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTE
    USA300_FPR3757  LRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTE
                    ************************************************************

    COL             IEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTPKYTHTSNQFTIWNGSTDTIN
    NCTC8325        IEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTPKYTHTSNQFTIWNGSTDTIN
    USA300_FPR3757  IEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTPKYTHTSNQFTIWNGSTDTIN
                    ************************************************************

    COL             PRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDT
    NCTC8325        PRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDT
    USA300_FPR3757  PRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDT
                    ************************************************************

    COL             NRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR
    NCTC8325        NRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR
    USA300_FPR3757  NRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR
                    **********************************