From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS02380 [old locus tag: SACOL0470 ]
  • pan locus tag?: SAUPAN002108000
  • symbol: SACOL_RS02380
  • pan gene symbol?: ssl3
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS02380 [old locus tag: SACOL0470 ]
  • symbol: SACOL_RS02380
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 472309..473367
  • length: 1059
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (472309..473367) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAAAATGAGAACAATTGCTAAAACCAGTTTAGCACTAGGGCTTTTAACAACAGGCGCA
    ATTACAGTAACGACGCAATCGGTCAAAGCAGAAAAAATACAATCAACTAAAGTTGACAAA
    GTACCAACGCTTAAAGCAGAGCGATTAGCAATGATAAACATAACAGCAGGTGCAAATTCA
    GCGACAACACAAGCAGCTAACACAAGACAAGAACGCACGCCTAAACTCGAAAAGGCACCA
    AATACTAATGAGGAAAAAACCTCAGCTTCCAAAATAGAAAAAATATCACAACCTAAACAA
    GAAGAGCAGAAAACGCTTAATATATCAGCAACGCCAGCGCCTAAACAAGAACAATCACAA
    ACGACAACCGAATCCACAACGCCGAAAACTAAAGTGACAACACCTCCATCAACAAACACG
    CCACAACCAATGCAATCTACTAAATCAGACACACCACAATCTCCAACCATAAAACAAGCA
    CAAACAGATATGACTCCTAAATATGAAGATTTAAGAGCGTATTATACAAAACCGAGTTTT
    GAATTTGAAAAGCAGTTTGGATTTATGCTCAAACCATGGACGACGGTTAGGTTTATGAAT
    GTTATTCCAAATAGGTTCATCTATAAAATAGCTTTAGTTGGAAAAGATGAGAAAAAATAT
    AAAGATGGACCTTACGATAATATCGATGTATTTATCGTTTTAGAAGACAATAAATATCAA
    TTGAAAAAATATTCTGTCGGTGGCATCACGAAGACTAATAGTAAAAAAGTTAATCACAAA
    GTAGAATTAAGCATTACTAAAAAAGATAATCAAGGTATGATTTCACGCGATGTTTCAGAA
    TACATGATTACTAAGGAAGAGATTTCCTTGAAAGAGCTTGATTTTAAATTGAGAAAACAA
    CTTATTGAAAAACATAATCTTTACGGTAACATGGGTTCAGGAACAATCGTTATTAAAATG
    AAAAACGGTGGGAAATATACGTTTGAATTACACAAAAAACTGCAAGAGCATCGTATGGCA
    GGCACTAATATTGATAACATTGAAGTGAATATAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1059

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS02380 [old locus tag: SACOL0470 ]
  • symbol: SACOL_RS02380
  • description: hypothetical protein
  • length: 352
  • theoretical pI: 10.3256
  • theoretical MW: 39738.4
  • GRAVY: -0.778409

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersHeme, porphyrin, and cobalaminhydroxymethylbilane synthase (TIGR00212; EC 2.5.1.61; HMM-score: 11.6)
  • TheSEED:
  • PFAM:
    OB_enterotoxin (CL0658) SSL_OB; Staphylococcal superantigen-like OB-fold domain (PF09199; HMM-score: 111.9)
    Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 31.2)
    PH (CL0266) bPH_2; Bacterial PH domain (PF03703; HMM-score: 12.3)
    no clan definedDUF4551; Protein of unknown function (DUF4551) (PF15087; HMM-score: 7.5)
    Ndc1_Nup; Nucleoporin protein Ndc1-Nup (PF09531; HMM-score: 7.1)
    Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 5.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide length 31 aa
    • Ymax: 0.643
    • Ymax_pos: 31
    • Cmax: 0.595
    • Cmax_pos: 31
    • Smax: 0.949
    • Smax_pos: 7
    • Smean: 0.823
    • D: 0.713
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446706678 NCBI
  • RefSeq: WP_000784024 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKMRTIAKTSLALGLLTTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKTLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPKYEDLRAYYTKPSFEFEKQFGFMLKPWTTVRFMNVIPNRFIYKIALVGKDEKKYKDGPYDNIDVFIVLEDNKYQLKKYSVGGITKTNSKKVNHKVELSITKKDNQGMISRDVSEYMITKEEISLKELDFKLRKQLIEKHNLYGNMGSGTIVIKMKNGGKYTFELHKKLQEHRMAGTNIDNIEVNIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS02380 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]