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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS02530 [old locus tag: SACOL0501 ]
  • pan locus tag?: SAUPAN002173000
  • symbol: SACOL_RS02530
  • pan gene symbol?:
  • synonym:
  • product: sodium-dependent transporter

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS02530 [old locus tag: SACOL0501 ]
  • symbol: SACOL_RS02530
  • product: sodium-dependent transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 501148..502485
  • length: 1338
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (501148..502485) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAAAGACAACAATCACAATGGAAGTCATCAACTGGATTTATTTTAGCTAGTGCGGGT
    TCTGCAATCGGTCTTGGTGCCATGTGGAAATTCCCATATATGGCAGGGATTTATGGCGGC
    GGTGCCTTTCTAGCTATGTTCTTAATATTCACCATTTTTGTTGGGTTGCCATTACTCATT
    ATGGAATTCACTGTTGGGAAAATGGGACGGACATATACAACACAAATATATAGTAAATTA
    ACTGGTAAAAAATGGCTCAATATCATTGGCTGGAACGGTAATTTGGCAGTGTTTATTTTA
    TTTGGCTTCTATAGTGTTATCGGTGGTTGGATTGTCATTTACATCGGACAAGTATTATGG
    CAATTAGTTATATTTCAACGCATCAATCATCTCCAAGAAATGAATTTTGAAGCGGTAATA
    TCAAATCCTTGGTTAACCGTTCTAGGGCAAGGTATATTCATATTCGCTACGATGATTATT
    GTCATGTTAGGTGTTGAAAAAGGATTAGAAAAGGCATCGAAAGTTATGATGCCATTGCTG
    TTTGTCTTTTTAATCGTCATTGTGATTAAGTCTTTAACATTAGATGGCGCCTTAGAAGGT
    GTGAAATTTATTTTACAACCAAGAGTATCAGAGATTACTGCTGATGGCATCTTGTTTGCG
    CTAGGTCAATCATTCTTTACGTTATCATTAGGAACTACAGGTATGATTACTTATGCGAGT
    TATGCCTCTAAAGACATGACGATTAAGTCATCAGCTATTTCTATCGTTGTTATGAATATC
    TTTGTATCTGTATTGGCAGGTCTAGCTATATTTCCGGCTTTACATAGTTTTGGCTATGAA
    CCACAAGAAGGGCCTGGATTATTATTTAAAGTACTGCCAATGGTCTTTAGTCAAATGCAT
    CTAGGCACATTATTCTATTTGGGATTCTTAGTGCTGTTCTTATTTGCGGCTTTAACGTCA
    TCTATTTCTTTATTAGAATTAAATGTTTCTAACTTCACGAAGAATGACAATACAAAACGT
    AAAAAAGTCGCAGTGATCGGTAGTATTTTAGTATTTATCATTAGTATTCCAGCAACCTTA
    TCTTTTGGTATCTTAAAAGATGTAAGATTCGGTGCGGGAACGATTTTTGATAATATGGAT
    TTCATCGTTTCGAATGTATTGATGCCATTAGGCGCATTAGGTACTACGCTTGTCGTAGGA
    CAATTATTAGATAAAAAATTATTACAACAATATTTTGGTAAAGATCGATTTAGATTATTC
    AGTGGTTGGTATTACTTAATTAAGTATGCGATGCCTGTCGTTATTATTTTAGTCTTTATC
    GTGCAATTATTTAGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1338

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS02530 [old locus tag: SACOL0501 ]
  • symbol: SACOL_RS02530
  • description: sodium-dependent transporter
  • length: 445
  • theoretical pI: 10.1621
  • theoretical MW: 49223.7
  • GRAVY: 0.838202

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    APC (CL0062) SNF; Sodium:neurotransmitter symporter family (PF00209; HMM-score: 157.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.186
    • Ymax_pos: 12
    • Cmax: 0.137
    • Cmax_pos: 36
    • Smax: 0.438
    • Smax_pos: 5
    • Smean: 0.35
    • D: 0.25
  • predicted transmembrane helices (TMHMM): 11

Accession numbers[edit source | edit]

  • GI: 446751470 NCBI
  • RefSeq: WP_000828726 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKRQQSQWKSSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLAMFLIFTIFVGLPLLIMEFTVGKMGRTYTTQIYSKLTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGQVLWQLVIFQRINHLQEMNFEAVISNPWLTVLGQGIFIFATMIIVMLGVEKGLEKASKVMMPLLFVFLIVIVIKSLTLDGALEGVKFILQPRVSEITADGILFALGQSFFTLSLGTTGMITYASYASKDMTIKSSAISIVVMNIFVSVLAGLAIFPALHSFGYEPQEGPGLLFKVLPMVFSQMHLGTLFYLGFLVLFLFAALTSSISLLELNVSNFTKNDNTKRKKVAVIGSILVFIISIPATLSFGILKDVRFGAGTIFDNMDFIVSNVLMPLGALGTTLVVGQLLDKKLLQQYFGKDRFRLFSGWYYLIKYAMPVVIILVFIVQLFS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS02530 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]