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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03720 [old locus tag: SACOL0724 ]
  • pan locus tag?: SAUPAN002546000
  • symbol: SACOL_RS03720
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS03720 [old locus tag: SACOL0724 ]
  • symbol: SACOL_RS03720
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 749090..749734
  • length: 645
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (749090..749734) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
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    421
    481
    541
    601
    TTGTCGCAAAATACAAATCATTCATATTATCATCAAAACCAGCATGCTCAATCAATAAGT
    AAAGTGTGGCTTTATTTTATGTATTATTGGATTATATTTGGCATAGGATGCTATCTAGGT
    CAGTTTTTACCATTAAGTTGGCGACAACCCTTGTCATTTGGATTACTGATTATTATTTTA
    GCAACACTTGTTTTTGAAAGAGCGAGACGGTTCGGTTTAATTATTTCACATATTTACGCT
    GTAGTGATTGGCTTATTGTCATACGCAACGTTTACCACGTATTTACAAAATTTAGGACCA
    GATATTTTCTATAAAAATATCGCATTAGCAATTTTTGCATTTATAGCATTTGGTATTATT
    GGTTATTTCTTCGTTGGAGATGCATCGAGTATAGGCAAATATTTATTCGTTACATTAATA
    ACATTAATTATTGCGAGTCTAATTGGTATTTTTCTTCAAAATCCTATTTTTTACACTATT
    ATTACCGTCGTTAGTCTGTTGTTATTTCTACTTTATACTTTGTATGATTTTAATCGTTTA
    AAAAGAGGTGACTATTCACCAAGAGAAATGGGATTTAATCTATTTATTAATTTGTTGAAT
    ATTATTAAGGATATACTTTACCTTGCTAATATGTTCAGAAGATAA
    60
    120
    180
    240
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    360
    420
    480
    540
    600
    645

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS03720 [old locus tag: SACOL0724 ]
  • symbol: SACOL_RS03720
  • description: hypothetical protein
  • length: 214
  • theoretical pI: 9.69029
  • theoretical MW: 24867.3
  • GRAVY: 0.752804

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Apoptosis-Inhib (CL0453) Bax1-I; Inhibitor of apoptosis-promoting Bax1 (PF01027; HMM-score: 69.2)
    no clan definedDUF3329; Domain of unknown function (DUF3329) (PF11808; HMM-score: 14.9)
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 7.4)
    DUF4191; Domain of unknown function (DUF4191) (PF13829; HMM-score: 6.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.104
    • Ymax_pos: 11
    • Cmax: 0.12
    • Cmax_pos: 19
    • Smax: 0.132
    • Smax_pos: 7
    • Smean: 0.106
    • D: 0.105
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

  • GI: 446003747 NCBI
  • RefSeq: WP_000081602 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS03720 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]