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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03915 [old locus tag: SACOL0762 ]
  • pan locus tag?: SAUPAN002587000
  • symbol: SACOL_RS03915
  • pan gene symbol?:
  • synonym:
  • product: HlyC/CorC family transporter

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS03915 [old locus tag: SACOL0762 ]
  • symbol: SACOL_RS03915
  • product: HlyC/CorC family transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 784134..785483
  • length: 1350
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (784134..785483) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    TTGGAAACTTCGACCATAATTAGTTTGATTATATTTATTCTATTAATTGCATTAACCACT
    GTATTTGTTGGTTCAGAATTTGCATTAGTAAAAATTAGAGCAACAAGAATTGAACAGCTA
    GCAGATGAAGGAAATAAACCTGCTAAAATAGTAAAAAAGATGATTGCTAATCTAGATTAT
    TATCTTTCTGCTTGTCAGTTAGGTATAACAGTAACATCTTTAGGGTTAGGTTGGCTTGGT
    GAACCAACGTTTGAAAAGCTATTACACCCAATATTTGAAGCAATCAATTTACCAACTGCA
    TTAACGACGACGATTTCGTTTGCAGTGTCATTTATAATCGTTACGTATTTGCATGTAGTA
    CTTGGTGAATTAGCGCCTAAATCTATAGCTATTCAACATACTGAAAAGCTTGCTTTAGTA
    TATGCAAGACCATTGTTCTATTTCGGTAACATTATGAAACCATTGATTTGGCTGATGAAT
    GGTTCTGCACGTGTTATTATTAGAATGTTTGGTGTAAATCCTGATGCCCAAACTGATGCA
    ATGTCAGAAGAAGAAATCAAAATTATTATTAACAATAGTTATAATGGTGGAGAAATCAAC
    CAAACTGAATTGGCATATATGCAAAATATCTTTTCATTCGATGAAAGACATGCAAAAGAT
    ATAATGGTACCTAGAACTCAAATGATTACACTAAATGAACCTTTTAATGTAGACGAATTA
    CTAGAAACAATAAAAGAACATCAATTTACGCGTTATCCAATTACTGATGATGGTGATAAA
    GACCACATTAAAGGATTTATTAACGTCAAAGAATTTTTAACTGAATACGCTTCTGGAAAA
    ACGATTAAAATAGCAAACTATATACATGAGTTGCCAATGATTTCAGAGACAACACGTATC
    AGTGATGCATTAATTAGAATGCAACGTGAACATGTACATATGAGTCTTATTATAGATGAA
    TATGGTGGAACGGCAGGTATTTTAACGATGGAAGATATTTTAGAAGAAATCGTTGGAGAA
    ATTCGTGATGAATTTGATGATGATGAAGTGAATGATATCGTTAAAATTGATAATAAGACA
    TTCCAAGTAAATGGCAGAGTACTATTGGATGATTTAACTGAAGAGTTCGGTATAGAATTT
    GATGACTCTGAGGATATTGATACGATAGGTGGATGGTTACAATCTCGTAATACCAATTTA
    CAAAAAGATGATTACGTGGATACAACTTATGATCGCTGGGTTGTTTCAGAAATCGATAAC
    CACCAAATTATTTGGGTGATATTAAACTATGAATTTAATGAAGCGAGACCTACTATCGGA
    CAGTCTGATGAAGATGAAAAATCAGAATAG
    60
    120
    180
    240
    300
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    420
    480
    540
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    660
    720
    780
    840
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    960
    1020
    1080
    1140
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    1260
    1320
    1350

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS03915 [old locus tag: SACOL0762 ]
  • symbol: SACOL_RS03915
  • description: HlyC/CorC family transporter
  • length: 449
  • theoretical pI: 4.25784
  • theoretical MW: 51150
  • GRAVY: -0.0665924

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    gliding motility-associated protein GldE (TIGR03520; HMM-score: 172.3)
    MetabolismEnergy metabolismSugarssugar isomerase, KpsF/GutQ family (TIGR00393; HMM-score: 24.8)
    MetabolismPurines, pyrimidines, nucleosides, and nucleotidesPurine ribonucleotide biosynthesisinosine-5'-monophosphate dehydrogenase (TIGR01302; EC 1.1.1.205; HMM-score: 23.6)
  • TheSEED:
  • PFAM:
    no clan definedDUF21; Domain of unknown function DUF21 (PF01595; HMM-score: 169.3)
    CBS; CBS domain (PF00571; HMM-score: 52.8)
    CorC_HlyC; Transporter associated domain (PF03471; HMM-score: 51.3)
    MGS; MGS-like domain (PF02142; HMM-score: 13.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.184
    • Ymax_pos: 29
    • Cmax: 0.22
    • Cmax_pos: 29
    • Smax: 0.319
    • Smax_pos: 30
    • Smean: 0.183
    • D: 0.183
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

  • GI: 446372402 NCBI
  • RefSeq: WP_000450257 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • METSTIISLIIFILLIALTTVFVGSEFALVKIRATRIEQLADEGNKPAKIVKKMIANLDYYLSACQLGITVTSLGLGWLGEPTFEKLLHPIFEAINLPTALTTTISFAVSFIIVTYLHVVLGELAPKSIAIQHTEKLALVYARPLFYFGNIMKPLIWLMNGSARVIIRMFGVNPDAQTDAMSEEEIKIIINNSYNGGEINQTELAYMQNIFSFDERHAKDIMVPRTQMITLNEPFNVDELLETIKEHQFTRYPITDDGDKDHIKGFINVKEFLTEYASGKTIKIANYIHELPMISETTRISDALIRMQREHVHMSLIIDEYGGTAGILTMEDILEEIVGEIRDEFDDDEVNDIVKIDNKTFQVNGRVLLDDLTEEFGIEFDDSEDIDTIGGWLQSRNTNLQKDDYVDTTYDRWVVSEIDNHQIIWVILNYEFNEARPTIGQSDEDEKSE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS03915 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]