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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04140 [old locus tag: SACOL0805 ]
  • pan locus tag?: SAUPAN002648000
  • symbol: SACOL_RS04140
  • pan gene symbol?: —
  • synonym:
  • product: glycerate kinase

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS04140 [old locus tag: SACOL0805 ]
  • symbol: SACOL_RS04140
  • product: glycerate kinase
  • replicon: chromosome
  • strand: +
  • coordinates: 827570..828694
  • length: 1125
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002951 (827570..828694) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAAGTATTAGTAGCCATGGATGAGTTTCATGGAATTATTTCAAGTTATCAAGCTAAT
    AGATATGTTGAAGAGGCAGTTGCAAGCCAAATTGAAACTGCAGATGTAGTTCAAGTACCA
    TTGTTTAATGGAAGACATGAATTATTAGATTCTGTATTTTTATGGCAATCTGGGCAAAAG
    TATCGTATACCAGTACATGATGCAGATATGAATGAAGTTGAAGGTGTTTACGGACAAACT
    GATACAGGGATGACCGTTATCGAGGGGAATTTATTTTTAAAAGGTAAAAAACCAATTGTT
    GAACGAACAAGTTATGGTTTAGGAGAAATGATTAAACATGCATTAGATAACGACGCAAAA
    CATGTTGTAATTTCACTAGGTGGGATTGATAGTTTTGATGCTGGTGCAGGTATGTTACAA
    GCATTAGGTGCTCAATTCTATGATGACGAAGGGCGTGTCGTAGATATGAGACAAGGTGCT
    GGTGTAATTAAATATATTCGTCGTATGGATATGTCGAACTTACACCCTAAAATGGAAACA
    GCAAGAATTCAAGTAATGTCGGATTTTTCAAGTCGATTATATGGTAAGCAAAGTGAAATC
    ATGCAAACTTATGATGCGCATCAGTTGAATCATAATCAAGCAGCAGAAATCGATAATTTA
    ATTTGGTATTTTAGTGAGTTATTTAAAAGTGAATTGAAAATTGCAATTGGTCCAGTTGAA
    CGTGGTGGTGCTGGTGGTGGAATTGCAGCAGTCTTGAATGGACTGTATCAAGCTGAAATA
    TTAACCAGTCATGCATTAGTAGACCAACTAACACATTTAGAAAATTTAGTTGAACAAGCG
    GATTTAATTATTTTTGGAGAAGGATTAAATGAAAATGATCAGTTGCTAGAAACGACAACA
    TTGCGTATTGCAGAACTTTGTCATAAACATCAAAAGGTTGCCATTGCAATTTGTGCAACT
    GCTGAAAAGTTTGATTTATTTGAATCACAAGGGGTTACAGCAATGTTTAATACATTTATC
    GATATGCCAGAAACTTATACTGACTTTAAAATGGGGTTACAAATTAGGCATTATACGGTT
    CAGTCTTTAAAACTGTTGAAAACACATTTTAATGTTGAGGTTTAG
    60
    120
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    360
    420
    480
    540
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    840
    900
    960
    1020
    1080
    1125

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SACOL_RS04140 [old locus tag: SACOL0805 ]
  • symbol: SACOL_RS04140
  • description: glycerate kinase
  • length: 374
  • theoretical pI: 4.87148
  • theoretical MW: 41797.3
  • GRAVY: -0.12246

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismEnergy metabolismOtherglycerate kinase (TIGR00045; EC 2.7.1.31; HMM-score: 176.1)
  • TheSEED:
  • PFAM:
    no clan definedGly_kinase; Glycerate kinase family (PF02595; HMM-score: 187.5)
    STAS (CL0502) STAS; STAS domain (PF01740; HMM-score: 14.4)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.104
    • Ymax_pos: 29
    • Cmax: 0.119
    • Cmax_pos: 22
    • Smax: 0.126
    • Smax_pos: 17
    • Smean: 0.078
    • D: 0.094
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446789486 NCBI
  • RefSeq: WP_000866742 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MKVLVAMDEFHGIISSYQANRYVEEAVASQIETADVVQVPLFNGRHELLDSVFLWQSGQKYRIPVHDADMNEVEGVYGQTDTGMTVIEGNLFLKGKKPIVERTSYGLGEMIKHALDNDAKHVVISLGGIDSFDAGAGMLQALGAQFYDDEGRVVDMRQGAGVIKYIRRMDMSNLHPKMETARIQVMSDFSSRLYGKQSEIMQTYDAHQLNHNQAAEIDNLIWYFSELFKSELKIAIGPVERGGAGGGIAAVLNGLYQAEILTSHALVDQLTHLENLVEQADLIIFGEGLNENDQLLETTTLRIAELCHKHQKVAIAICATAEKFDLFESQGVTAMFNTFIDMPETYTDFKMGLQIRHYTVQSLKLLKTHFNVEV

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SACOL_RS04140 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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