NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus COL
• locus tag: SACOL_RS04140 [old locus tag: SACOL0805 ]
• pan locus tag^?: SAUPAN002648000
• symbol: SACOL_RS04140
• pan gene symbol^?: —
• synonym:
• product: glycerate kinase

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS04140 [old locus tag: SACOL0805 ]
• symbol: SACOL_RS04140
• product: glycerate kinase
• replicon: chromosome
• strand: +
• coordinates: 827570..828694
• length: 1125
• essential: unknown

⊟Accession numbers

• Location: NC_002951 (827570..828694) NCBI
• MicrobesOnline:

⊟Phenotype

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⊟DNA sequence

• 1
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  541
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  1081
  
  ATGAAAGTATTAGTAGCCATGGATGAGTTTCATGGAATTATTTCAAGTTATCAAGCTAAT
  AGATATGTTGAAGAGGCAGTTGCAAGCCAAATTGAAACTGCAGATGTAGTTCAAGTACCA
  TTGTTTAATGGAAGACATGAATTATTAGATTCTGTATTTTTATGGCAATCTGGGCAAAAG
  TATCGTATACCAGTACATGATGCAGATATGAATGAAGTTGAAGGTGTTTACGGACAAACT
  GATACAGGGATGACCGTTATCGAGGGGAATTTATTTTTAAAAGGTAAAAAACCAATTGTT
  GAACGAACAAGTTATGGTTTAGGAGAAATGATTAAACATGCATTAGATAACGACGCAAAA
  CATGTTGTAATTTCACTAGGTGGGATTGATAGTTTTGATGCTGGTGCAGGTATGTTACAA
  GCATTAGGTGCTCAATTCTATGATGACGAAGGGCGTGTCGTAGATATGAGACAAGGTGCT
  GGTGTAATTAAATATATTCGTCGTATGGATATGTCGAACTTACACCCTAAAATGGAAACA
  GCAAGAATTCAAGTAATGTCGGATTTTTCAAGTCGATTATATGGTAAGCAAAGTGAAATC
  ATGCAAACTTATGATGCGCATCAGTTGAATCATAATCAAGCAGCAGAAATCGATAATTTA
  ATTTGGTATTTTAGTGAGTTATTTAAAAGTGAATTGAAAATTGCAATTGGTCCAGTTGAA
  CGTGGTGGTGCTGGTGGTGGAATTGCAGCAGTCTTGAATGGACTGTATCAAGCTGAAATA
  TTAACCAGTCATGCATTAGTAGACCAACTAACACATTTAGAAAATTTAGTTGAACAAGCG
  GATTTAATTATTTTTGGAGAAGGATTAAATGAAAATGATCAGTTGCTAGAAACGACAACA
  TTGCGTATTGCAGAACTTTGTCATAAACATCAAAAGGTTGCCATTGCAATTTGTGCAACT
  GCTGAAAAGTTTGATTTATTTGAATCACAAGGGGTTACAGCAATGTTTAATACATTTATC
  GATATGCCAGAAACTTATACTGACTTTAAAATGGGGTTACAAATTAGGCATTATACGGTT
  CAGTCTTTAAAACTGTTGAAAACACATTTTAATGTTGAGGTTTAG
  60
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  1125
  

⊟Protein

⊟General

• locus tag: SACOL_RS04140 [old locus tag: SACOL0805 ]
• symbol: SACOL_RS04140
• description: glycerate kinase
• length: 374
• theoretical pI: 4.87148
• theoretical MW: 41797.3
• GRAVY: -0.12246

⊟Function

• reaction:
• TIGRFAM:
  MetabolismEnergy metabolismOtherglycerate kinase (TIGR00045; EC 2.7.1.31; HMM-score: 176.1)
• TheSEED:
• PFAM:
  no clan definedGly_kinase; Glycerate kinase family (PF02595; HMM-score: 187.5)
  STAS (CL0502) STAS; STAS domain (PF01740; HMM-score: 14.4)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.104
  • Ymax_pos: 29
  • Cmax: 0.119
  • Cmax_pos: 22
  • Smax: 0.126
  • Smax_pos: 17
  • Smean: 0.078
  • D: 0.094
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446789486 NCBI
• RefSeq: WP_000866742 NCBI
• UniProt:

⊟Protein sequence

• MKVLVAMDEFHGIISSYQANRYVEEAVASQIETADVVQVPLFNGRHELLDSVFLWQSGQKYRIPVHDADMNEVEGVYGQTDTGMTVIEGNLFLKGKKPIVERTSYGLGEMIKHALDNDAKHVVISLGGIDSFDAGAGMLQALGAQFYDDEGRVVDMRQGAGVIKYIRRMDMSNLHPKMETARIQVMSDFSSRLYGKQSEIMQTYDAHQLNHNQAAEIDNLIWYFSELFKSELKIAIGPVERGGAGGGIAAVLNGLYQAEILTSHALVDQLTHLENLVEQADLIIFGEGLNENDQLLETTTLRIAELCHKHQKVAIAICATAEKFDLFESQGVTAMFNTFIDMPETYTDFKMGLQIRHYTVQSLKLLKTHFNVEV

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SACOL_RS04140 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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