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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05025 [old locus tag: SACOL0982 ]
  • pan locus tag?: SAUPAN003119000
  • symbol: SACOL_RS05025
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS05025 [old locus tag: SACOL0982 ]
  • symbol: SACOL_RS05025
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 991023..991664
  • length: 642
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (991023..991664) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGAAATTTTAAATGATTCTGTAAAAAGTTTTGAAAAACTTTATTTACAATTACAAGAT
    GGTTTTCCAGTGATTGTTCCTACTGATACTAATTATAATTTATGTAGTTTACCTAACAAC
    GATCTTTGTATCGATAAAATATTTGAATATAAAAAGCGATCGAAAGATAAGCCATTATCA
    TTATTTATTGATAAGCCAGAGGATTGGAAATTGTATGGAGATAATCAAAATACGGAAATA
    GTTGATAAACTAGTTGAAATATTTTGGCCTGGACCATTAAATATTATTTTAAAAAATAAA
    ACAAGCTATAATTATATGCTCAATAATTCAGATAGTATAGCTATAGGATGTGTACAAAAT
    AAAACGATGAGAAGATTTATTTCATATATTAATTCACCTATAGCAATTACTTCAGCAAAT
    ATATCTGGAACTGCCGATGATATTTTAATAACTGAAAATGAAGCAATTAAGCACATGGGC
    GAAAATGTAAGATATATGCTAAGAAGTCAAAATAAAACTAACTATAAAACATCTAGTACG
    ATTATTAAAGTGACAGATAATAAAATTGAATTATTAAGAGAAGGAGATATAAAGTTTGAA
    GAAATAAAAGAAAGACTAGGTACAGGTATTATTTATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    642

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS05025 [old locus tag: SACOL0982 ]
  • symbol: SACOL_RS05025
  • description: hypothetical protein
  • length: 213
  • theoretical pI: 5.15196
  • theoretical MW: 24548.9
  • GRAVY: -0.41831

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein synthesistRNA and rRNA base modificationtRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family (TIGR00057; HMM-score: 115.7)
    Genetic information processingProtein fateProtein modification and repaircarbamoyltransferase HypF (TIGR00143; HMM-score: 15.6)
  • TheSEED:
  • PFAM:
    no clan definedSua5_yciO_yrdC; Telomere recombination (PF01300; HMM-score: 136.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.131
    • Ymax_pos: 29
    • Cmax: 0.107
    • Cmax_pos: 29
    • Smax: 0.224
    • Smax_pos: 23
    • Smean: 0.115
    • D: 0.125
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446326567 NCBI
  • RefSeq: WP_000404422 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMGENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS05025 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]