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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05140 [old locus tag: SACOL1006 ]
  • pan locus tag?: SAUPAN003173000
  • symbol: SACOL_RS05140
  • pan gene symbol?: yjbH
  • synonym:
  • product: DsbA family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS05140 [old locus tag: SACOL1006 ]
  • symbol: SACOL_RS05140
  • product: DsbA family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1015350..1016156
  • length: 807
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1015350..1016156) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
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    421
    481
    541
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    781
    ATGGCTGGAGAATTACGAATAATGGAAAATAAGAGTCGTGAAGATATCAATCTATCACCT
    GTAAGTAAAATCGAAATTTATTCATTTTTCGATCCATTTAGCTCCGATTGCTTCAAATTA
    TCAGCAATCTTATCCAAATTAAGAATTGAATATAATCAATATATACGTATCAGACATATA
    TTAAATCCTTCGTTAAAAGTATTAACGAAATGCCAAGCTCAAAGTACATCCAACTTTGAT
    AACATCGCCCTAGCTTATAAAGCAGCTGAGTTACAAGGTCGTGTACGTGTCGAACGATTT
    ATACATTTAATGCAAAATGAAATCATACCTAAAAGAGATATTATTACAGAATCAATGATT
    TGTGACTGTATTCAAAATGCAGGTATTGATTTAGAAGTATTTAAAGACGACTTACAAAAA
    AGTAAACTAACCGAAAGCTTGAAAATTGATTTGCATATTGCAAGAGAAATGGAAATCGAA
    CAAGCCCCTTCTCTCGTTTTCTTTAGTGAAGATGTTCATGAAGAAGGTTTAAAAGTCGAA
    GGATTATACCCATATCACATCTATACTTATATAATTAATGAATTGATGGGTAAACCTATC
    GAAAAGAATCTTCCTCCTAAATTAGAAACTTATATACAGCAACAACAACTTGTAACGATG
    GAAGAATTACTTACTATTTATGAATGGCCAGAAAAACTTTTAAACAAAGAGTTAAAGAAG
    TTAGCCATTCAACAAAAAATTGAAAAACTTAAATATCCAGATGGCGATTTCTGGAAATCT
    AAAATGCCTAAAATCAAATCAAAATAA
    60
    120
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    360
    420
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    807

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS05140 [old locus tag: SACOL1006 ]
  • symbol: SACOL_RS05140
  • description: DsbA family protein
  • length: 268
  • theoretical pI: 6.68145
  • theoretical MW: 31391.4
  • GRAVY: -0.358209

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Thioredoxin (CL0172) Thioredoxin_5; Thioredoxin (PF13743; HMM-score: 148.8)
    DSBA; DSBA-like thioredoxin domain (PF01323; HMM-score: 18.1)
    Thioredoxin_2; Thioredoxin-like domain (PF13098; HMM-score: 14.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.095
    • Ymax_pos: 12
    • Cmax: 0.107
    • Cmax_pos: 24
    • Smax: 0.106
    • Smax_pos: 4
    • Smean: 0.09
    • D: 0.093
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446819443 NCBI
  • RefSeq: WP_000896699 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MAGELRIMENKSREDINLSPVSKIEIYSFFDPFSSDCFKLSAILSKLRIEYNQYIRIRHILNPSLKVLTKCQAQSTSNFDNIALAYKAAELQGRVRVERFIHLMQNEIIPKRDIITESMICDCIQNAGIDLEVFKDDLQKSKLTESLKIDLHIAREMEIEQAPSLVFFSEDVHEEGLKVEGLYPYHIYTYIINELMGKPIEKNLPPKLETYIQQQQLVTMEELLTIYEWPEKLLNKELKKLAIQQKIEKLKYPDGDFWKSKMPKIKSK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS05140 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]