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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05235 [old locus tag: SACOL1026 ]
  • pan locus tag?: SAUPAN003201000
  • symbol: SACOL_RS05235
  • pan gene symbol?:
  • synonym:
  • product: membrane protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS05235 [old locus tag: SACOL1026 ]
  • symbol: SACOL_RS05235
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1035682..1036485
  • length: 804
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1035682..1036485) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGTTAATGGATCCAAGTTTGATCTTACCTTATTTATGGGTACTTGTCGTTTTAGTATTT
    TTAGAAGGCTTATTAGCAGCAGATAACGCGATTGTTATGGCTGTAATGGTTAAGCACTTA
    CCACCCGAACAACGTAAAAAAGCTTTGTTTTACGGTTTGTTAGGTGCATTTGTATTTAGA
    TTTTTAGCATTATTCTTAATTAGTATTATCGCGAACTTTTGGTTTATTCAAGCTGCAGGA
    GCGGTTTACTTAATTTATATGTCAATCAAAAATCTGTGGCAGTTCTTTAAACACCCAGAA
    ATTGAAAGTCCTGAAGCTGGAGATGATCATCATTATGATGAATCTGGTGAAGAGATTAAA
    GCAAGTAACAAATCATTCTGGGGAACTGTGTTGAAAATAGAATTTGCAGATATCGCATTT
    GCCATTGATTCTATGCTTGCTGCTTTAGCTATTGCTGTAACACTTCCTAAAGTTGGTATT
    CACTTTGGTGGTATGGACTTAGGTCAGTTCGTAGTCATGTTCCTAGGTGGAATGATTGGT
    GTTATTCTAATGCGTTATGCAGCAACATGGTTTGTAGAGCTATTAAACAAATATCCAGGA
    CTTGAAGGTGCAGCCTTCGCGATCGTTGGTTGGGTAGGTGTTAAATTAGTTGTCATGGTA
    TTAGCGCACCCAGACATCGCTGTATTGCCTGAGCACTTCCCACATGGCGTATTATGGCAA
    TCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTT
    AAAAATAAAAAATCGCATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    804

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS05235 [old locus tag: SACOL1026 ]
  • symbol: SACOL_RS05235
  • description: membrane protein
  • length: 267
  • theoretical pI: 6.80419
  • theoretical MW: 29702.3
  • GRAVY: 0.792509

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    integral membrane protein, YkoY family (TIGR03716; HMM-score: 297.4)
    integral membrane protein, YjbE family (TIGR03717; HMM-score: 88.1)
    integral membrane protein, TerC family (TIGR03718; HMM-score: 32.8)
  • TheSEED:
  • PFAM:
    LysE (CL0292) TerC; Integral membrane protein TerC family (PF03741; HMM-score: 175.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.153
    • Ymax_pos: 27
    • Cmax: 0.257
    • Cmax_pos: 27
    • Smax: 0.21
    • Smax_pos: 28
    • Smean: 0.107
    • D: 0.135
  • predicted transmembrane helices (TMHMM): 7

Accession numbers[edit source | edit]

  • GI: 446851157 NCBI
  • RefSeq: WP_000928413 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFRFLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIKASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIGVILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQSIFWTVLIGLVIIGWLGSVVKNKKSHK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS05235 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]