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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05340 [old locus tag: SACOL1046 ]
  • pan locus tag?: SAUPAN003239000
  • symbol: SACOL_RS05340
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS05340 [old locus tag: SACOL1046 ]
  • symbol: SACOL_RS05340
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1054224..1054355
  • length: 132
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1054224..1054355) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    ATGAGGTATGTAACGATGCGCCAATTCATTAAAAGAACTGTTAAAACAATCCTTGTCGGT
    TATGTAATTAAATTTATTCGAAATAAACTTTCAGGTAAATCATCACATCCGACAGATAAT
    AAACATAATTAA
    60
    120
    132

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS05340 [old locus tag: SACOL1046 ]
  • symbol: SACOL_RS05340
  • description: hypothetical protein
  • length: 43
  • theoretical pI: 11.7681
  • theoretical MW: 5107.04
  • GRAVY: -0.551163

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.224
    • Ymax_pos: 11
    • Cmax: 0.104
    • Cmax_pos: 36
    • Smax: 0.65
    • Smax_pos: 3
    • Smean: 0.513
    • D: 0.337
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_001790177 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MRYVTMRQFIKRTVKTILVGYVIKFIRNKLSGKSSHPTDNKHN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS05340 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]