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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07045 [old locus tag: SACOL1384 ]
  • pan locus tag?: SAUPAN003728000
  • symbol: SACOL_RS07045
  • pan gene symbol?: opuD1
  • synonym:
  • product: glycine/betaine ABC transporter

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS07045 [old locus tag: SACOL1384 ]
  • symbol: SACOL_RS07045
  • product: glycine/betaine ABC transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 1388396..1390042
  • length: 1647
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1388396..1390042) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTAT
    AGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAAC
    TATGTTACCAATAATATTAAAATGTGGATTACAGAAAAGTTAGGTTGGTATTATCTTATT
    CTTACTACGATTATCGTGTTCTTCTGTATATTCCTTATTTTTAGTCCTATTGGAAAACTT
    AAACTAGGTAAACCAAATGACAAACCTGAGTTTAATACAATTTCATGGTTTGCTATGTTG
    TTTAGTGCTGGTATGGGGATAGGTTTGGTGTTTTATGGTGCAGCTGAACCGATGGCGCAC
    TTTGCTACGCCACCTACAGCAGATCCCAAAACTACTGAAGCTTATACTGAAGCTCTACGT
    TCAACATTTTTCCATTGGGGATTCCATGCTTGGGCTGTTTATGGTGTTGTTGCGTTAGCG
    TTGGCATATTCGCAATTCCGTAAAGGTGAACCAGGTTTATTATCTAGAACTTTACGTCCT
    CTTTTAGGTGATAAAGTAGAAGGTCCTATTGGGATTTTTATTGACGTTTTATCTGTATTT
    GCGACAATCGTTGGGGTAGCCGTTTCGTTAGGTATGGGTGCTCTACAAATTAATGGTGGT
    TTACATTACTTGTTCAATGTTCCAAACAATACGTTTGTACAAGCGATTATCATCATTGTT
    GTTACTATCTTATTTATAGCAAGTGCATGGTCTGGATTAAGTAAAGGTATTCAATACTTA
    AGTAACTTGAACATTGGTTTAGGTACTATTTTAATGGTAGCTGCTTTAATTGTTGGACCA
    ACTGTTCTTATTTTAAATATGTTAACTAGCTCTACGGGTAGTTTACTAAACACATTCTTG
    TTTAATAGTTTTGATACAGCAGCTTTAAATCCTCAAAAACGTGAATGGATGTCTTCATGG
    ACACTTTATTACTGGGGTTGGTGGTTAAGTTGGAGTCCATTCGTTGGAGTGTTTATTGCA
    CGAGTTTCAAAAGGACGTTCAATTAGAGAGTTCATTTCTGGTGTCTTGCTAGTTCCAGCA
    ATTGTTAGTTTTGTTTGGTTTAGTGTCTTTGGTGTATTAGGCATCGAGACAGGTAAGAAA
    CACAAAGAAATTTTTGATATGACTCCTGAAACACAGCTATTTGGAGTGTTTAATCATGTG
    CCATTTGGCATTGTTTTATCGTTGATTGCATTATTATTAATTGCATCATTCTTTATTACA
    TCTGCTGACTCAGCAACATTTGTATTAGGAATGCAAACAACATTTGGTTCATTAAATCCA
    TCTAGTATGGTAAAAGTTGTTTGGGGAATTTCACAGGCCTTAATAGCATTTGTACTTTTA
    TTAGCTGGTGGCGGTAACGGCGCTGAAGCTTTAAATGCGATTCAAAGTGCTGCAATTATA
    AGTGCATTCCCATTCTCCTTTGTCGTCATACTCATGATGGTAAGTTTCTACAAGGATGCG
    AACCAGGAACGTAAATTCCTAGGTTTAACATTGACTCCGAATAAACATCGCTTACAAGAA
    TATATCAAGAGTCAACAAGAAGATTATGAATCTGACATTCTTGAAAAGCGTCAGTCACGT
    AGAAATATAGAGAAAAAAGATAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1647

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS07045 [old locus tag: SACOL1384 ]
  • symbol: SACOL_RS07045
  • description: glycine/betaine ABC transporter
  • length: 548
  • theoretical pI: 9.4764
  • theoretical MW: 60471.4
  • GRAVY: 0.520255

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsOthertransporter, betaine/carnitine/choline transporter (BCCT) family (TIGR00842; HMM-score: 514)
  • TheSEED:
  • PFAM:
    APC (CL0062) BCCT; BCCT, betaine/carnitine/choline family transporter (PF02028; HMM-score: 613.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.19
    • Ymax_pos: 36
    • Cmax: 0.139
    • Cmax_pos: 43
    • Smax: 0.412
    • Smax_pos: 31
    • Smean: 0.23
    • D: 0.205
  • predicted transmembrane helices (TMHMM): 11

Accession numbers[edit source | edit]

  • GI: 447011722 NCBI
  • RefSeq: WP_001088978 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNSSSPENPNGKKYSPVFIYSAIVVAIVVLLGAFLPEQFNYVTNNIKMWITEKLGWYYLILTTIIVFFCIFLIFSPIGKLKLGKPNDKPEFNTISWFAMLFSAGMGIGLVFYGAAEPMAHFATPPTADPKTTEAYTEALRSTFFHWGFHAWAVYGVVALALAYSQFRKGEPGLLSRTLRPLLGDKVEGPIGIFIDVLSVFATIVGVAVSLGMGALQINGGLHYLFNVPNNTFVQAIIIIVVTILFIASAWSGLSKGIQYLSNLNIGLGTILMVAALIVGPTVLILNMLTSSTGSLLNTFLFNSFDTAALNPQKREWMSSWTLYYWGWWLSWSPFVGVFIARVSKGRSIREFISGVLLVPAIVSFVWFSVFGVLGIETGKKHKEIFDMTPETQLFGVFNHVPFGIVLSLIALLLIASFFITSADSATFVLGMQTTFGSLNPSSMVKVVWGISQALIAFVLLLAGGGNGAEALNAIQSAAIISAFPFSFVVILMMVSFYKDANQERKFLGLTLTPNKHRLQEYIKSQQEDYESDILEKRQSRRNIEKKDN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS07045 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]