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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07220 [old locus tag: SACOL1418 ]
  • pan locus tag?: SAUPAN003789000
  • symbol: SACOL_RS07220
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS07220 [old locus tag: SACOL1418 ]
  • symbol: SACOL_RS07220
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1429051..1429395
  • length: 345
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1429051..1429395) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGACATTATTCGATATGCCTAATTATTTATGGATCACAACATTAATAATGATTTTATTA
    ACAATATTCTGTTGCTTAGTTTTAAATAAATGGTTTGTATCTGCAGTAATTACATTTGTT
    ATATTAGGTGTGCTTGCATTTTTTATTCCAAATTTTCAAGATATAAAATATCAACCATTA
    TTAGGATACGCTGCATTTTTAGCGATTATGAGTTTATTAATTAGTTTTCTATTATGGTAT
    TTTACTAGAAATTGGCGTAAAGAAAGAAAAGCGCGTAAATTAGAAAAGCAAATTGAAAAA
    TACGGCTATGAGGGCGCTGAACTTCGCCGTAAAGATAAAAAATAA
    60
    120
    180
    240
    300
    345

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS07220 [old locus tag: SACOL1418 ]
  • symbol: SACOL_RS07220
  • description: hypothetical protein
  • length: 114
  • theoretical pI: 10.156
  • theoretical MW: 13657.4
  • GRAVY: 0.431579

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesPathogenesistype VI secretion protein IcmF (TIGR03348; HMM-score: 14.7)
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 11.4)
    MetabolismTransport and binding proteinsUnknown substrateAspT/YidE/YbjL antiporter duplication domain (TIGR01625; HMM-score: 11)
    Genetic information processingProtein fateProtein and peptide secretion and traffickingpreprotein translocase, YajC subunit (TIGR00739; HMM-score: 9.1)
  • TheSEED:
  • PFAM:
    NfeD-like (CL0252) NfeD; NfeD-like C-terminal, partner-binding (PF01957; HMM-score: 20.8)
    MviN_MATE (CL0222) Polysacc_synt; Polysaccharide biosynthesis protein (PF01943; HMM-score: 16.3)
    no clan definedTMEM238; TMEM238 protein family (PF15125; HMM-score: 15.7)
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 14.3)
    APC (CL0062) K_trans; K+ potassium transporter (PF02705; HMM-score: 14.1)
    LysE (CL0292) NicO; High-affinity nickel-transport protein (PF03824; HMM-score: 13.6)
    no clan definedDUF4381; Domain of unknown function (DUF4381) (PF14316; HMM-score: 13.4)
    LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 13.3)
    MENTAL; Cholesterol-capturing domain (PF10457; HMM-score: 12.8)
    PRA1; PRA1 family protein (PF03208; HMM-score: 12.5)
    TNF_receptor (CL0607) stn_TNFRSF12A; Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain (PF12191; HMM-score: 12.3)
    no clan definedDUF3149; Protein of unknown function (DUF3149) (PF11346; HMM-score: 11)
    DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 10.2)
    NADP_Rossmann (CL0063) CoA_binding_3; CoA-binding domain (PF13727; HMM-score: 9.6)
    no clan definedTweety; Tweety (PF04906; HMM-score: 9)
    DUF3329; Domain of unknown function (DUF3329) (PF11808; HMM-score: 8.9)
    Halogen_Hydrol; 5-bromo-4-chloroindolyl phosphate hydrolysis protein (PF10112; HMM-score: 8.3)
    OAD_gamma; Oxaloacetate decarboxylase, gamma chain (PF04277; HMM-score: 8)
    E1-E2_ATPase; E1-E2 ATPase (PF00122; HMM-score: 7.2)
    Sigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 7.1)
    SieB; Super-infection exclusion protein B (PF14163; HMM-score: 6.9)
    Vpu; Vpu protein (PF00558; HMM-score: 6.3)
    GT-C (CL0111) YfhO; Bacterial membrane protein YfhO (PF09586; HMM-score: 5.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.163
    • Ymax_pos: 36
    • Cmax: 0.326
    • Cmax_pos: 36
    • Smax: 0.191
    • Smax_pos: 38
    • Smean: 0.078
    • D: 0.13
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit source | edit]

  • GI: 446093943 NCBI
  • RefSeq: WP_000171798 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTLFDMPNYLWITTLIMILLTIFCCLVLNKWFVSAVITFVILGVLAFFIPNFQDIKYQPLLGYAAFLAIMSLLISFLLWYFTRNWRKERKARKLEKQIEKYGYEGAELRRKDKK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS07220 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]